RNA id: XR_002474782.2


Basic Information

Item Value
RNA id XR_002474782.2
length 3118
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110531954
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34281341 ~ 34298265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTGAAACACCCCTATCAGTTGCCATTTTACTTTGGACAAGGCTTGACTAGATTTGTACCTGAAAACGCAATATTTGATGAGGAGGCGTGAGTGCAGTTCTCTTTAGTATTTTGTAAAGAAAGTGTGTCCTTGTTCAAATTTGATCGGAGTTATCGGCGCAAGGGAGCAGCGGTTTGCACAAGAAGGGCTCATCTCGGACGTGAGTATTGCCAATGCTAACAGATGGTATATGCCATGAATTGTAAGGAAGCTGCAGAGAAGGTTGTCTTGTCATGGTCGCGATTCACCTCAGCTGGCCAAACTACTCTACTGGAGACCCTGAAGGCATTCAGTCCTATGTCAGATGACCTTTTTGACAGTGAAAAGGAACTGGCCACTTTTATTGAGGGACTCAAAGATGAAGGTCACAAGCCTACTGTACTTAAAAGTAAGGATGTCTATGGTTACAGGTCTTGTACTTCAGTACTCAGGCCTTTAGTAAAGACGCAGAGTACTCTGGACATTGCTACCTCAAAGGTTAAAAAGACTGGCAAAAGGAAGAGTCGAAAACCCCTGGACAAGAACACTGAAATCAACTATGCTTTGTTAAGTGCAGCAGCGAAAGTCGTCCTGAAGAATCAACCCAAGATTCTTTTGACAAATCTGTCAAAGGAGTCTCTCAAACAGACGGTCCTCTCAAAACCACCGGACTTGGCTGTTGGCCCTGTCCAGATGCAGTCATACATAAGACTGACAAACATAATTGGACCCTCTACAGGCCACACAGCAAGACTGCagttccacacaggtgtggtcaGAAGAGGTAACGGTACCCAACTCTCATCGGCCACCATCTCTAACAGGGACACAAGCACTGCATTTGGAAGGTACCGGAAACTCCGAAAAATCAGTCACTTTGAGGAGAGTGAACTTTGTGCCTTGCCCAGTCAATATCATTGGAGTCCCTGTTCCTGCCATGCTGCACAACGACCGGTTTTTGAAGGAATGCAACAGAATGCCTTGCTGGAGGGACCAGAAAATGAGAAGGACTGATGAGGCTGAGGACTAACTCTGTGAAGAGGCCCAGAAAAGGGGTCTGGCTGGTCAAAGAGCAGGAAGACCTCTGACTGAGCCAGAGCAACCGGAGGTTCGAGGTGAAGGTTGACTCAATCATTGACAAGGTGAGGTAAGCCCAGAAGATCCTTCGAGGTCACCGGTCAGAGATTCGACCACTTATTGCCTACCCAATGTGAACGGCCGTCAAGAGTCTTATTCCTTTTGTCCTCCATGTACATGTTCAAACAAGTTTCAGTTACATCTCAAATCGAGACggtgctttgtcttggctgtgctcAGTTTGGGAGGATTGGGATTGTTTGGGATACTTTTCTGAGATTGGGAAAAATAATATTTATGTTCAATATATGTTTACATAAGAGGATGCTGGTGTATTACCTAAACATCCAAAAATCTGGTTTGTTTTGTCTAACACTGCACATAGTATAGGCCACCCCTTGACTGATAAGGGAAGGAATGGATAAGTGGTGAGTTGaacctacagtgtgtgtgtaatgttataTATATTCTTCTTTTGAACCATTATGAAATGTAATTTTCTTCTGTTTTATAAATGATACACACATCTTTGACAATGAAGTCATGTATAACTATGCAGCATTCACTTGCTAGAATATTACAGCTATTTTATATACATTTCTAGTCATGTCATTACTGTATTTTGGATAATTGGGTCCATTCAAAtagtgttttctttttttttttttttttttttttttttttttcatgtgttATGAAGGTAGTTTTGTTTTTGGATGTGATAAGTTAAGAGCTCCTATACATCTGTTAAAGGATGCATATGGAACAGGgcaaacaacaaccacagcgtAGCCTATTCACAACCAATACTGCCCTATCAAGCTAAAAAGGCAGTAACTGGTCAAATGAGCTGTTTATTTTTTTCCTTCATGAAATacatgtggacaagtatcctgcctcttGTGTTTTGGAGAAAGTGAGGGTCATGTTAGCAGTTACTGTGAAACAAGGTAAATAAAAGCCATCTTTCTCAGTTCTACACTATGAGCAGTTAGTGCCTTTTTTTTGCTTTGTAGGGCAGAATAGTAATCTTATTTCtcctaattaaaaaaataaaaagctacCTTTTTTTTATTTGCATTTGCATAGACATTAAAAAACATTTGGTTTCCTGCCAATTACGCGTGCCAGCACTCGATAAACTTGTGGAGTAGTACTCGATGCGTAGCACTGCAAACAGTGCAGCATTTTAGAGCTATCCTATGGAGAGAAATTGCAACAATGTTCTGACACTAGCGCAGTAATCAAATTACATGTCACaatgttttgattaatttacaGATGTCGATAGTGATGACAGGGTGATTTGCATAATATAGACTTTGCTGAAATGTGTTGATCATAACAGCTGTAATATAACCAGTAATTTTGTAATAAAATATGAGACGCTGGGATGAATTGATCAGGGGTATGTTCATTCAACAAATAACCCGTTTCTTGTACAAATCAATGCCCATACGTCCAAAAGGCTACTGACTGGGAGTGTAGTCATAAGGTCTGAATGCTAACTGCCACAATCTCATATTAGAAAACATGCCATGGTCTCTGCATATAAAACTCCGAGCATATTATTCAAGCCATTATTGAGGGTACAGAACAGCACACGAATAAGgcagcaagagagagggaagttAGCAGCCCATGGGACCACCAGGTGAATAGGTGCATGCATTTTCCACCTATCAAAACCCTGCTAACAACAAATGTTCCCACACCTTCAGAGCAAGTTCCCTTAAGAGTCTACcgttttcataggaatgttccaGTGGAGTGCAAGGACTGTTTCCAAGAGACCAGTCCGTTAATGTCAAACACAATTTACCCAGAACGTGGTTACCATGTTCACTGAATATTCAATGTTCTAGATACGTTTTCTAAGGGTTGGGAGAATATTCCAAtgtcccaccaaacatacacagaacatggcaAACTCTAAAATAtgaatgttctagacacgtttcattGTAACGTTGCCAGAACATTTGTGTCAGTTGTCCGGAAGTCTCCTGATGATCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906585 lncRNA upstream 100880 34180169 ~ 34180461 (+) True G796517
TU906557 lncRNA upstream 170982 34110136 ~ 34110359 (+) True G796489
TU906549 lncRNA upstream 179494 34101648 ~ 34101847 (+) True G796481
TU906530 lncRNA upstream 211504 34069592 ~ 34069837 (+) True G796463
TU906529 lncRNA upstream 212019 34069110 ~ 34069322 (+) True G796462
TU906627 lncRNA downstream 3223 34301488 ~ 34301885 (+) True G796558
TU906671 lncRNA downstream 24323 34322588 ~ 34323051 (+) True G796601
TU906674 lncRNA downstream 27839 34326104 ~ 34326407 (+) True G796604
TU906687 lncRNA downstream 44441 34342706 ~ 34342932 (+) True G796617
TU906693 lncRNA downstream 61634 34359899 ~ 34360091 (+) True G796623
XM_021615495.2 mRNA upstream 152470 34058069 ~ 34128871 (+) False LOC110531951
XM_021615497.2 mRNA upstream 152470 34064382 ~ 34128871 (+) True LOC110531951
XM_021614371.2 mRNA upstream 223771 34052296 ~ 34057570 (+) False rl32
NM_001160636.2 mRNA upstream 223771 34052311 ~ 34057570 (+) True rl32
XM_021615485.2 mRNA upstream 355558 33863185 ~ 33925783 (+) False LOC110531947
XM_021615501.1 mRNA downstream 46090 34344355 ~ 34349297 (+) True LOC110531955
XR_005053228.1 mRNA downstream 87619 34385884 ~ 34392962 (+) True LOC118966029
XM_036989281.1 mRNA downstream 312025 34610290 ~ 34612491 (+) True LOC110531960
XM_021615507.2 mRNA downstream 344654 34642919 ~ 34682784 (+) True LOC110531961
XM_036986939.1 mRNA downstream 647875 34946140 ~ 35104382 (+) True LOC110531155
TU906563 other upstream 159601 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 1693953 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1778592 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1778986 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 2156605 32122682 ~ 32124736 (+) False zgc:112271
TU907166 other downstream 257666 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1066723 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2014864 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2736153 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 3268980 37567245 ~ 37570411 (+) True G799858

Expression Profile