RNA id: XM_021615501.1


Basic Information

Item Value
RNA id XM_021615501.1
length 2434
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110531955
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34344355 ~ 34349297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATGCATTGCAATCAGTGCTAATttgaagatactgtatgtgtatagcTGTTCCTCTTACTAGCCAAAACACACTGCATTGTCCTGGTTTAAATAAGGGGTTGAGGTAGCTGAATATAAATGATTAAACCCAATCGATATCATGTCTGTTATAGCGTGAAGTATTTTGTTGACatgaagctaacgttagctagctaaaggaAACAGAAGTGTCAATGTAGCGGAAGTGGTACTGCCCTGAACGATTCGAGGAGAGACACGGAGGACGGAGGCTGCATTGTCCAGAGAAAAAGCAGGAATTAGAGCCGTAAAAATTACTGAAAAATGGACAAGAACGACCTGGTACAAAAGGCCAAGCTCGCTGAGCAGGCTGAGCGCTATGACGATATGGCTGGGGCCATGAAGTCTGTGACGGAGCAGGGTGGGGAGCTCTCCAATGAGGAGCGCAACCTGCTGTCGGTGGCCTACAAGAACGTTGTGGGGGCACGCCGCTCATCCTGGCGGGTCATCTCCAGCATTGAGCAAAAGACAGAGGGCAATGAGAAGAAGCAAGCCATGGCCAAGGAGTACCGGGAGAAGATTGAAACCGAGCTGCAGGACATCTGCAACGATGTGCTGGGACTTCTTGACAAGTACCTGATTGCCAATGCCACTGCAGCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTATAGATACCTGTCTGAGGTAGCAGCTGGGGATGCAAAAAAGACCACAGTGGATAATTCCCAGCAGGCATACCAGGATGCTTTCGACATCAGCAAGAAGGAGATGCAGCCAACACACCCCATCAGGCTCGGCCTGGCCCTCAACTTCTCTGTCTTTTACTATGAAATCCTCAACAACCCTGAGAAGGCCTGCACCTTGGCCAAGACGGCATTTGATGAAGCCATCGCTGAACTCGACACCTTAAATGAGGATTCCTACAAAGACAGTACTTTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCGGAAAAccagggagatgagggagagaccggAGAAGGGGAAAACTAATGGAATTGCACTGTTAATCTATCTACACTCTTAAACACAAACAGCTTATAAACATCCACCTCCACTCCAtcaacccctcccccctctgtatGACAAGCAGCCGGAATTGTTCCTGACCAACTAGTTTATCCCTCTCAGGTCACTGAGGCGACAGGGTAATGTCCAGGTTGTCATTTTGTTTGTGAAAATAATGTGGTTCTATTGAGTAGCGAGTCCATGTTGCTGttatttagttgttttttttgtgtgtgtgtgcgctaaaTTGGGTGTGTGAATGACTGACTGTTGGGGGCGGGGGTTGTTAATTCTAATCGTCCTTAATTCCTTTGTTCCACCTAGCTGGTTGTGCATATTTTGTTACGGTCATTTTTTTTTGTGATTTGTCATGGTATTGCAGATTTAACGTATGGTTATTAAACTGGCAGTTAATTTTCACCAATGCTGTGATGCTAAGTGTTATATTTTCTTCCCCACATCACTATTGCTTTTAAAATTCAGACAGTACAATCCTGTATTTAACTAACAGTGCAATTCTGCTGTGTGCTCATACAGAAAGGAGGCAGGCTGTATTGTGACACTGGCATCTGGGCGTTTTGCTCTATAATCACTTTCACAATTTCAAGGTTTGATTAAGGGACCCCTTACTTCGCCATGTTAGATTTCCCCATTATAAGACATTCCACCAGAATTGTATTAGGCTTTATGAAAGGCAGAACTCTTTTTGAACAAAGTGGATTATTGTCCTAATGGTATAACTCAATGTTCAAGATCAAGCGCTGCTTGAACTCAATACAATGAAAATTGTATGTGCTTAAATGTTCCATGTATTTTGCAAGATTGACTATCTTTCTTTAAAACCTAAAGTAACTGAACGTTTTTTCAAAAATGTCTTATCACACTGTATCAACCCTGCTTGCAAAATATTCCTCTTAAAGCGGTTGTTTTCTCCAATGTTTCTGTGCCTGGTTTCCTATTAGACACTTCAAAATGGAAGACATGTTCATGTCGCTTGTTTGACTGCCAAGAAGTTGAAATTAAGCTTAGACCGTCTTCTATTCTCTCTTAGAATCTCAACATATTTGTTATGTATGTTCTATGGTTTGTAAGGTATGTCATAATTTGCTCTCATGCCCCTAAACTCTACTGCTTTGAACATAAGCCTCTGAAGCCATTGCTGTACAATTTATTGTGAAGCAGCAGATTGGAGAGCCAACTCATACCACAACCCAAGTAAGAAGCAGTGTCACAAATTCACAATATCAACACAACCATTACATCCCACATAGAGTAAGACACTCATCTACATATAGCGGCCAGTCTGCTTTCTTAGAGTCAATTCTCATCTTTATCTGAATAAATAAAATGTGGAACAGGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906687 lncRNA upstream 1423 34342706 ~ 34342932 (+) True G796617
TU906674 lncRNA upstream 17948 34326104 ~ 34326407 (+) True G796604
TU906671 lncRNA upstream 21304 34322588 ~ 34323051 (+) True G796601
TU906627 lncRNA upstream 42470 34301488 ~ 34301885 (+) True G796558
TU906585 lncRNA upstream 163894 34180169 ~ 34180461 (+) True G796517
TU906693 lncRNA downstream 10602 34359899 ~ 34360091 (+) True G796623
TU906699 lncRNA downstream 16710 34366007 ~ 34367054 (+) True G796629
TU906708 lncRNA downstream 46203 34395500 ~ 34395818 (+) True G796636
TU906710 lncRNA downstream 48698 34397995 ~ 34398216 (+) True G796638
TU906692 lncRNA downstream 74679 34423976 ~ 34426889 (+) True G796622
XR_002474782.2 mRNA upstream 46090 34281341 ~ 34298265 (+) True LOC110531954
XM_021615495.2 mRNA upstream 215484 34058069 ~ 34128871 (+) False LOC110531951
XM_021615497.2 mRNA upstream 215484 34064382 ~ 34128871 (+) True LOC110531951
XM_021614371.2 mRNA upstream 286785 34052296 ~ 34057570 (+) False rl32
NM_001160636.2 mRNA upstream 286785 34052311 ~ 34057570 (+) True rl32
XR_005053228.1 mRNA downstream 36587 34385884 ~ 34392962 (+) True LOC118966029
XM_036989281.1 mRNA downstream 260993 34610290 ~ 34612491 (+) True LOC110531960
XM_021615507.2 mRNA downstream 293622 34642919 ~ 34682784 (+) True LOC110531961
XM_036986939.1 mRNA downstream 596843 34946140 ~ 35104382 (+) True LOC110531155
XM_036987863.1 mRNA downstream 866574 35215871 ~ 35360678 (+) True LOC110531964
TU906563 other upstream 222615 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 1756967 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1841606 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1842000 32501847 ~ 32502355 (+) True G794892
TU904137 other upstream 2219917 32122682 ~ 32124438 (+) True zgc:112271
TU907166 other downstream 206634 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1015691 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1963832 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2685121 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 3217948 37567245 ~ 37570411 (+) True G799858

Expression Profile