RNA id: XR_005053228.1


Basic Information

Item Value
RNA id XR_005053228.1
length 1326
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118966029
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34385884 ~ 34392962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGCTATCAGTAAGGAAAgcagctattggctgtcctagaagtcgctaaattacGTCATCACCTCATTTGCATAAATGGCcttgtgcatgtaattgtgatggaagctgtaggagagaggaacaACGTCGTGGGGGAGACAAAAAggcgggatcagctaGGGTCGGCTTCCTGCAtgcgcgattcatttgcagtctcgGCGGGGTGAAcctctcctgctctgactgcagctgggaggtTCTGCTGTGTGAGGACTGGGCCGCCTGTGAGTGCTTTGAGACGGGGGTGGGGCCCACGGCAGcgctcgttgagaagacaggtcagccaccagaggGAGACTCGTtgaggcctggtgacagacggattacacatcacgaggcgatggctttatctgctggacgtgccaggtctcgacAGGCTTTCCTGCCAGGACTAATTGTGGCTgattggtgagtaatcaagggctgattgctcaccagctgtacaAGTCCCAgaaagctgccagaagggcagcacacagggGAGAGACTGGGGTGTGAAAGGACTCCAGTATAGTTGGGGACGGTACCGGAGGAAGTTCAGTTTTTGATTCCCACAGGATACAGCAAGATccggagcccagaagacggtatcccggAGAGGGTCTCTTGGGGGAGACCTTTTCTTTTGGACTTTTATTTTAATAACAACCTTTTGAAACTGAGCTAATCctactctgtccgtgtctgatctgtgtaaacgttTTGACCCAACCCCTTGGTCTGCCACAATATGTGATATTGTTTACATGTAATGCTTGACAGGCTAAATGTTCCAGAAAATAACCAACAAGATCAAATCAATTTTTAATATTAAATCTTCAACTTCACATGTTCAAAAGGCATATTTTTTTTTTGCGGAACTACCTATCGAACACTTAACTCACTTCACTTCCCTCTGAATTTGCCATTCAGTTTCAGTAGGAGCAaattttctaacttaattgagtcTATCCTGGCTCGCTTTGCAGTGAAGAGTAGTCCAGCACAGCTAAGAAGACGCTCGAAGGCAGGCCTGTGTTGAGTTTGAGGGACAACTTCTTTATGTACGGAAAACCATTTTGTCCGATGGACTAGCAAGATATCCATCCAGCTCCCCTGTATCATCTGACCCTTTGGTTGTCAGTGATGAGAAGAAATCCTCTTCATCCGATGAATGCTGCCTTAGATGCTCAGTCTCGTCCCGTGTAACTGTGTCAAAAGGATTCTTCAGGTAAGCCAAACTTGTACCTTGGAAACAACACAACATTCACATGTCCAGTGCTTCAGAAAACTGTTGTGTGGCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906699 lncRNA upstream 18830 34366007 ~ 34367054 (+) True G796629
TU906693 lncRNA upstream 25793 34359899 ~ 34360091 (+) True G796623
TU906687 lncRNA upstream 42952 34342706 ~ 34342932 (+) True G796617
TU906674 lncRNA upstream 59477 34326104 ~ 34326407 (+) True G796604
TU906671 lncRNA upstream 62833 34322588 ~ 34323051 (+) True G796601
TU906708 lncRNA downstream 2538 34395500 ~ 34395818 (+) True G796636
TU906710 lncRNA downstream 5033 34397995 ~ 34398216 (+) True G796638
TU906692 lncRNA downstream 31014 34423976 ~ 34426889 (+) True G796622
TU906696 lncRNA downstream 35552 34428514 ~ 34432568 (+) True G796626
TU907144 lncRNA downstream 145171 34538133 ~ 34538560 (+) True G797034
XM_021615501.1 mRNA upstream 36587 34344355 ~ 34349297 (+) True LOC110531955
XR_002474782.2 mRNA upstream 87619 34281341 ~ 34298265 (+) True LOC110531954
XM_021615495.2 mRNA upstream 257013 34058069 ~ 34128871 (+) False LOC110531951
XM_021615497.2 mRNA upstream 257013 34064382 ~ 34128871 (+) True LOC110531951
XM_021614371.2 mRNA upstream 328314 34052296 ~ 34057570 (+) False rl32
XM_036989281.1 mRNA downstream 217328 34610290 ~ 34612491 (+) True LOC110531960
XM_021615507.2 mRNA downstream 249957 34642919 ~ 34682784 (+) True LOC110531961
XM_036986939.1 mRNA downstream 553178 34946140 ~ 35104382 (+) True LOC110531155
XM_036987863.1 mRNA downstream 822909 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 1006717 35399679 ~ 35403549 (+) False LOC110531967
TU906563 other upstream 264144 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 1798496 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1883135 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1883529 32501847 ~ 32502355 (+) True G794892
TU904137 other upstream 2261446 32122682 ~ 32124438 (+) True zgc:112271
TU907166 other downstream 162969 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 972026 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1920167 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2641456 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 3174283 37567245 ~ 37570411 (+) True G799858

Expression Profile