RNA id: XM_036989281.1



Basic Information


Item Value
RNA id XM_036989281.1
length 526
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110531960
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34610290 ~ 34612491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAAGCACAGATATGTGCTGTGAtgttgagaggagagggactctcctggaagctGTTTCTGCTAATAGTATACAATATATCTGGTGGGTAAAGACATGAACCCCCAAGAGGAACACTGGATGGTCACTCTGCAGGTTGTGTTCTACCCAGCCTTGGCTATAGTGGGCATCCCCTCCAACATTGTTACCTTTCTCATCTTCTGGCGGAGAAACTGCCTGCTGTCCAAGTCCAGCACCTTCTACCTGATGGCCATCTCTGTAGCTGACACTCTGGTCCTCATCTTCATCGTGGTGCTGGAGATCACTGTCAAATTTTACCAGGAGGTACTTATTTCATCAGAAATGTCACTGTTCTTTTCATTTCTTGTTCTGTCAGTAAAAGTTTACATTGGATTTCTATAGTAACGCTGTAATTACTACAGTAACAGCAAACAGCATTGTATTAACGCAGTAGCCTATTTCAGGGCTTCCCAAACTTTGTTCCAGGGCCTCCCTAGTACATGCTTTAGTTTTTGCCCAAGTAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU907226 lncRNA upstream 5976 34599357 ~ 34604314 (+) True G797115
TU907212 lncRNA upstream 19629 34590458 ~ 34590661 (+) True G797101
TU907191 lncRNA upstream 32982 34576845 ~ 34577308 (+) True G797080
TU907167 lncRNA upstream 49523 34560389 ~ 34560767 (+) True G797057
TU907155 lncRNA upstream 59088 34550846 ~ 34551202 (+) True G797045
TU907245 lncRNA downstream 1911 34614402 ~ 34615276 (+) True G797132
TU907317 lncRNA downstream 133425 34745916 ~ 34776053 (+) True G797201
TU907355 lncRNA downstream 157572 34770063 ~ 34867567 (+) True G797225
TU907410 lncRNA downstream 205674 34818165 ~ 34824262 (+) True G797271
TU907450 lncRNA downstream 255816 34868307 ~ 34875882 (+) False G797309
XR_005053228.1 mRNA upstream 217328 34385884 ~ 34392962 (+) True LOC118966029
XM_021615501.1 mRNA upstream 260993 34344355 ~ 34349297 (+) True LOC110531955
XR_002474782.2 mRNA upstream 312025 34281341 ~ 34298265 (+) True LOC110531954
XM_021615495.2 mRNA upstream 481419 34058069 ~ 34128871 (+) False LOC110531951
XM_021615497.2 mRNA upstream 481419 34064382 ~ 34128871 (+) True LOC110531951
XM_021615507.2 mRNA downstream 30428 34642919 ~ 34682784 (+) True LOC110531961
XM_036986939.1 mRNA downstream 333649 34946140 ~ 35104382 (+) True LOC110531155
XM_036987863.1 mRNA downstream 603380 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 787188 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 787188 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 53668 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 488550 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2022902 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2107541 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2107935 32501847 ~ 32502355 (+) True G794892
TU908119 other downstream 752497 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1700638 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2421927 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2954754 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 3457725 38070216 ~ 38071433 (+) False G800834

Expression Profile