RNA id: XM_036986939.1



Basic Information


Item Value
RNA id XM_036986939.1
length 4937
RNA type mRNA
GC content 0.57
exon number 22
gene id LOC110531155
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34946140 ~ 35104382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGGCTTCGGCTCTCCACATCCAGGTACGACACGCCCCCCTCGAGACGGTGAGGTCCCTGGGGTTGATTACAACTTTATGTCCATAGAGGACTTCCTAAATCTTGAGCAGTGTGGAACACTACTGGAAATAGGAACGTATGAAGGTAACTATTATGGGACCCCCAAGCCGCCGAGGCAGCCCGTGGTTGGGACAGTGATTTTCAGTAATGCTGTGCTCCTCAACGGCCCCCCAGGCTCCCAGCAGTCAACTCCCAAGCACACCAAGTCCTACAATGACATGCAAAACACCCGAGTAGTGCCTGCTGACTACGAGGATGACGACCAGACCACGGAAATGAACAACAGTTTTACAGGTAACTCTAGCGACCAGGACGAGAGCCGCGGCGGTGTTCTTCGGCCATATCCCGCGCGCGAGAATGCTCCGTCCTATGGTCTGAACAACGTGGCCGCCTCCACCTCGGACAACGGGCAGCAGACGCATGCCCAACCCCAGGCCTCTCCTGAAGACCCCCTGGGACCCCTGCCAGACAACTGGGAGATGGCCTACACAGAGAATGGAGAAGTCTACTTTATAGACCACAACACAAAGACCACATCGTGGATCGACCCCCGGTGTCTTGAGAAACCTCTGAAACCTCTGGAAGAGTGTGAGGATGATGAAGGGGTACATACTGAGGAACCAGACAATGAACTAGAGCTGCCTGCAGGATGGGAGAAGATAGATGACCCAGTGTATGGGGTGTACTACGTAGAtcACATCAACAGGAAGACCCAGTATGAGAACCCCATAGTGGAGGCTAGGCGCAGGATGcagctggagcagcagcagccgcaGCCTCCTGAAGagtGGATAGAGGAGCACTCCTCAGCTGGTGCTCCCCTGGCCAACTATGCCAATAACCACCTAGAGACGTACCGCGACCCGCAGGTCCCGCCCCCGCTGCCCCCTGCTCTGGGAGGGGCCAAACGAGAGAAGCCATTCTTCACACGGAACCCAGCAGAGCTGAAGGGAACTTTCATCAACACCAAACTGAAGAAGAGCCGCCGCGGATTCGGCTTCACCGTAGTTGGGGGCGATGAGCCGGATGAGTTCCTGCAGATCAAGAGTTTAGTCCTGGATGGTCCTGCTGCTGTGGATGGGAAGATGGAGACAGGTGACGTGATAGTGAGTGTGAACGACACCATCGTTCTGGGCTACACCCACGCCCAGGTGGTGAAGATTTTCCAGTCCATCCCGATCGGCTCCATGGTGGACCTGGCCCTGTGCCGCGGCTACCCCCTGCCATTTGACCCTGACGACCCCAACACCAGCTTGGTGACCTCCGTGGCCATCCTGGACAAGGAGCCCATCATCGTCAATGGCCAGGAGAGCTACGACTCTCCGTCCAGCCACGGCAGTCAGACCGGAGGGCCTGTTAACGGGATGAGGGAGCCGCGGGCCCACAGTCCCTCGGCAGAGGTGGTGTCCAACGGCTCTCACGGCTACTCCTCCAGCGACGTGGTCACCCTGGCATCATCCATCGCTGGGCAGCCAGAGCTGATCACAGTGCACATGGAGAAAGGCGATAAGGGCTTTGGGTTCACCATCGCTGACAGCCTGACGGGAGGGGGTCAGAGGGTGAAGCAGATCGTGGATTACCCCCGCTGCAGGGGCCTGAAGGAGTCAGATATTCTGATGGAGGTGAACAAGAGGAATGTCCAGAACATGAGCCACAACCAGGTGGTGGACCTGCTCAGCAAGTGTCCCAGAGGGAGCGAGGTCACCATGCTGGTGCAGAGAGGAGTGGTGGCGGCCAAGAGGAGCCCCAAGCTGGTGCAGCAGCTGGAGAGGAAGGACAGTCAGAGCAGCTCCCAGCACAGTGTGTGCAGCCATCGCAGCACCCACACAGACTCCCCCAGCCACCCCCCCTCCAACATGCCCAGTGAGGCCATGGCCCCCCCTCCGGCCGCACCCACTCAGCCACTGCCTGGCTTGCCTCCGCTGCCCACCCAGGACCCTGTAGATGGCACCATGACCCTCCAGAAGAAGCCAGACCCCTTCAAGATCTGGGCCCAGTCCAGGAGCATGTATGAGAGCAGACAGCCAGATTGCCAGGAGCAGGAGATTTTCCTGTGGCGGAAGGATACAGGATTTGGGTTCCGCATCCTTGGAGGAAATGAGCCTGGGGAGCCGATCTACATTGGACACATAGTGAAGTACGGTGCAGCAGATGAGGACGGACGCCTGCGTTCTGGGGACGAGCTCATCTGTGTGGACGGCACGGCGGTGGTGGGGAAGTCTCACCAGCTGGTGGTGCAGCTGATGCAGCAGGCCGCCAAGCAGGGCCACGTCAACCTCACAGTCCGACGCAAGAGCTCTGGATACGGAGTTTCGAAAGGGGAGGGTGACGTGCCCCCGTCCCCTGCCTCGTCCCACCACAGCAGCACCCAGGCCCCCTCCCTGACGGAGGGAAAGCGGACCCCGCAGGGCAGCCAGAACTCCCTCAACACGGTCAGCTCTGGCAGTGGCTCCACCAGTGGCATCGGCAGTGGGGGAGGAGGTGGCTCCGGCAGTGCTGTGGTCACCGCAGCCCTGCAGCCCTATGACGTGGAGATCCAACGTGGAGAGAATGAGGGCTTCGGATTCGTCATTGTGTCATCTGTCTCTAGGCCTGATGCTGGGACTACATTCGCTGGCAATGCATGTGTGGCCATGCCCCACAAAATAGGGCGCATCATCGAGGGGAGCCCTGCGGACCGCTGTGGGAAGCTGAAGGTGGGCGACCGCATCTTGTCCGTCAACGGCTGCTCCATTACCAACAAGTCCCACTCGGACATCGTCAACCTGATCAAGGAGGCCGGGAACACAGTCTCTCTGAGGATCATTCCTGGTGATGAGTCCTCCAACGCGTCTCTGTTGACCAACGCTGAGAAGAttgccaccatcaccaccacgcACACACCCCAAACTGCCACGGAGCCTCGGAACAACTCAAAGTCGAAACaggctcctcctccacctcctccaacaCAAGCTCAGCCCTCACAGgaTGCCGAGTTCTACTCTGTGGATCTGGAGCGGGACAGTAAAGGCTTTGGGTTCAGCCTGAGAGGAGGACGGGAGTACAACATGGACCTATATGTGTTGAGGCTGGCTGAGGACGGGGCGGCTGGCAGGAATGGCAAGATGAGGGTGGGAGATGAGATCCTGGAGATCAACGGCGAGAGCACAAAGAACATGAAGCACGCACGGGCCATCGAGCTGATCAAGAATGGTGGCCGGAGGGCACACCTGGTCCTCAAGAGGGGCGATGGATCTGTACCTGAATATGACTCCAGCCATGACGGGCACTCTCCCACACCCGGGGCACAAAACTCTCCGGAAGTGAGAACCCTGCCACCAAACAGCCGATATCACACCTCATCGGAGTCAAGTTATCCACAAGACCTTCACAAACCATCACGCCACAAGGATGCTGCGCAGGGCCGAGACAGGGACAGGATGGAGCACCAGGGCCAGCACTTTAacccccaccaccatcacacctggaacaacaaccacagccatACCACCCCCAGCCAACACTACCCTGAAAACAGTGGCGGCAACAATAAGAAGAGCCGGGGACGCAAAGTCAACAAGTCAGAGTCAGAGAGCGGCATCTCAAAACTATTAAAGACTCTGCGTaaggacagctctaggaagaaggCTGCAGCTGCAGTGGCAGCTACAGAACGAGAGCGGGAGCTCTCCGCTAGTAGCAGTACTCTAGACCCGAGGTACAGTCGACCACGCCGCGGCTCCCTCGACCGTTCGCCCACCCGTAAACATAAAGCCTCCCCTGACCGACGGCGGGCCAAGTCCATGGACCGCAGGGTTGAGCGAGCACACCGAGGCCGCACACCCGAAAAGGAGAGCGAGGACGGAGGTTTCATCAGTCATGCGGCTACTCCTGAACAACCACTCTACGACCGCAGGCTCCTGAGGGAACCACAGACCCTGGGCCGAGCCTACTTAGAGGCCACCACCCCAGAGCGCCTGAACAAAAGggcttcctccctgtctctttccaGGGGGTGGACTCCTGACAGAGGCAGCCTGAAGAACGGCAACCTCCTGAGGGACTCGCCGGTTGAGACGAGGGAGGAGAGGTATGGGATGAACGGAACGCCAGAGAGACGGTACAGGTCAGAGAGAGATTCATCTCCAGACAGCAGCTATAGCAGGGAGGAGCTGAACTACTGCAGTACACTGAAGAACAATGCCTCCACTCACAACCACACAGGCTACAACGCAGCAGGACACTGCAACAACGCAGCAGGACACAACAACACAGCAGGACACAACAACACAGCAGGACACAACAAAGCAGCAGGACACAACAACGGAGTAGGTCGCGCCCAGAACCAGTTCCCCGTGCCTATGAGAAGGCTTTACAAAGAGATCCCGAAGGACCTCAGCATCTGAGTGGACAGAGCCTGGACCCTGGCCTCTCACCCCTCAACCTGTGTAGGCCACAGCACATACACTGGACTTGGACTTCTAAGGAGATTAACTCGTGATTTATCCAATCGCCTGgttgattgattcattgatttGACTACTTGTGATCCGGGACAGAGATTCATACCACAGCAGGAGTACaatcttttttttgtttgtaCTGTATGTTTTGCTTCTGTTCACATTATTTTGAGCATTACGGCAGTTGTTAATACTGTAGTGAAGGTATGTGTATGTGCCTATCACATCACAAATGGCGATTTAGCTTTTTTTGGGCATCTCTGTTTGGAACCTCAGAGGGAACACATACAGTCGCTAGTGAAAGACTACACACCacttgcacagtcttcacattttgctgcctcgAAATGCAATCCAAACATTTATTAAATTAGATTGGTAGAACAATTATCTACaaaacctactccacattttcgaagtgaaagaaaaat

Function


GO: NA

KEGG:

id description
K05631 AIP3, WWP3, BAIAP1; atrophin-1 interacting protein 3 (BAI1-associated protein 1)

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU907471 lncRNA upstream 8293 34933988 ~ 34937847 (+) False G797326
TU907472 lncRNA upstream 8293 34935557 ~ 34937847 (+) True G797326
TU907455 lncRNA upstream 23744 34882000 ~ 34922396 (+) True G797312
TU907462 lncRNA upstream 30155 34913655 ~ 34915985 (+) False G797319
TU907464 lncRNA upstream 30155 34913655 ~ 34915985 (+) True G797319
TU907343 lncRNA downstream 116 35104498 ~ 35108733 (+) False G797224
TU907347 lncRNA downstream 116 35104498 ~ 35108663 (+) False G797224
TU907344 lncRNA downstream 154 35104536 ~ 35108663 (+) False G797224
TU907348 lncRNA downstream 154 35104536 ~ 35108733 (+) False G797224
TU907345 lncRNA downstream 471 35104853 ~ 35108663 (+) False G797224
XM_021615507.2 mRNA upstream 263356 34642919 ~ 34682784 (+) True LOC110531961
XM_036989281.1 mRNA upstream 333649 34610290 ~ 34612491 (+) True LOC110531960
XR_005053228.1 mRNA upstream 553178 34385884 ~ 34392962 (+) True LOC118966029
XM_021615501.1 mRNA upstream 596843 34344355 ~ 34349297 (+) True LOC110531955
XR_002474782.2 mRNA upstream 647875 34281341 ~ 34298265 (+) True LOC110531954
XM_036987863.1 mRNA downstream 111489 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 295297 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 295297 35399679 ~ 35403549 (+) False LOC110531967
XR_002474786.2 mRNA downstream 295297 35399679 ~ 35403549 (+) False LOC110531967
XR_002474787.2 mRNA downstream 295297 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 389518 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 824400 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2358752 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2443391 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2443785 32501847 ~ 32502355 (+) True G794892
TU908119 other downstream 260606 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1208747 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1930036 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2462863 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2965834 38070216 ~ 38071433 (+) False G800834

Expression Profile