RNA id: XM_021615514.2


Basic Information

Item Value
RNA id XM_021615514.2
length 2544
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110531966
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35381661 ~ 35400349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCGAATAGTATGGAAGGCTTGTTTGAGGAGCTAGTGAGGCTGAAGGTCCACAGTGTCCCAGTATCGGATGAAGGAGTTCCTGGAGTCCCTGTCCAACAAGAGCTCAGAGGCACTGCAGGAGTTCAACCAGCAAGCAGGTGTTatcactacaaccaccaccatgGTTTACCAGCAGGGGGTCAACTGCATCTACACAGACAGCAACGAGGTGGCTGGGTCACTGCTGGAACTGTCTGTCTGCAACAGCAGGTACAGGTGTCCCAGCAGAAGGTGATGTCATGACAGCAGCAGCTCTCGCCCCATATGACCACAGCCGCAAGGGCAAGACATAATACAGACAAATGACCTAGGAAGAGCTCACAGTGACAAGAAGCAGAGGTCCTCGGGGGACAGGATCGTCCTTCCGTCCAGTCTAAAGGATGAGGGTGGACAGGCATCACACATGAAAGTGTGTGAAGAGGTGCAGGAAGAAAATGCAGAGGCTGTGAAAACCCCATCTGTCTGTGAACCACTGGATATTGAGGACTTGGAGGAGTCTACTGTAAAGGAAAGTCCAGTTCCTCCAAAGGACACTGAAGATACAGATAAGGCTTCAACCGAGGGCCAACAACTGGTAGAGGAACACAACCCTGACATCCTCCTACCTCACCCTGTTGATGCCCTGGAGAATGCCTATGTGAACACCCCCCCTGTTTGTGAACCACTGATTATTGAGGACTTGGAGGACTCTCCTGACAAGGAATATCCAGCTCCCCGAAAGACTGAGGATGTAGAATGTGCTTCAGCACAGGGCCAAGAACAGATCCAGGTAGATAAGGACCGAGATAAGGACAAAGACCATGATATGCCCCTCCCTTGCTGCTTAGATAACCTGAAGAAGCGCTTCTACCAGAGCAGGGACCGCCAGATCAGGGAAAGACACTGGGCCCAGTTCAGAGCAGAGACCCTGAGGGTGGCCCACCAAGGGATAGTTGTCCTGCAACGTGAcctggagctggagctggagcGGGTTAGAGAGGGCCTAGAGGATAGACGGCAGCGCAGAGAGAGGGACCATTACACTCTGGCccaagtgaagagagagagacagaaaaagagagaagagcaGATAAAAGGATGGATGGAAAAGTGGATGatagggagggaagaggagagccaGGGGGAAGAAGGTGcggaagagggggagacagaggaagaggagaaagagggagaggaggaaagtgaAAAGGAAGAGGAGAGTGAGGATGAAGAGGGTGATACAGAGGGAgcggaagagaaggagaaagaggagaaggtggaggagggagacagggaggggagtgAAGAGGAGAGTGAGGCGGATgaagagagcgaggaggaggatGGCATAGAGACTATCTGCAAGGAGGTGAAGATGCAGATGCACTTGATCAAGGGCGACATTGAGCATGATATGAAGAATGACTATGAGCAGAACAAGAATAGGGAAGTCCAGGACCGGAAGATGTTGACCACCCTGCTGCAGTGCTTGGAGTCAGTCTACCAGACACGCACTGAGGAGATACTGGGCAAGATAGGCATGCTGTGGGACATCATGATCAACAACATGCTCCAGGACCTCCATGGAAGGAGAGCAGCCCAGAAGTCAGTGTCTGCCCAGACTGCGCAGTATCTCCACTTCTGCCACAGTCCCCGTCTGGCCCCCATTACCCCTCTGACTGAAGCGGGCAGGAGGCTCCTCAAGGGATGGGCAAGAGGCCAACAGGATGACGAGGCAAAGAAGACTGGCAAAGGGAAagggaagaagaaaaagaagaagacacagagagaacaagtGAAGGATGAGGAGAAAGACAGTCAGTTGCTGCAGAAGGAGGAAATGGTGGAAAGTAAGCCAGAAGAGAATAAAAAGTCAGGGTTTCTCCAATTGCTGCTGCTCAAACTGACATGCATTCAATGATGACAAAATATTTAGAAAAAATAAAGTTTGAAACCAGCTTGATTTTGTTTTTGATTTTGATAATCTTTGGTTTATCCATCTGGGTTTCACCCAATGATTGCATATAAACTCTGGATTACTGATactatgtattggccaatgagaggctttaAAGCCACCGGTCAGCCATATTGGTGCTCCCCAGAAGAAGCAGTCCTCCATATGAATGAATGGAAttatacagtatttcaattaaatgttctAAAGACACATTTGTTGATGTAGTGGGAACAGTAACagaacttaaaaaaatatatacttaaaGGAAAATGTTAATATAGTTTTCAATTTTATGTTCAGTTTATATAATACAATTTTAAAGTGTGCATTAATGTGTCTGTACTAGAATAAAActggcaaaaacaaatgtagatgttaataaattgatttttatagcttccaaaataaaaaaaaacacagtggAGGAGTGCCAAATAGGAGGCTGGCTTCAACACAGCGCCTCCTGTTAGGTATCTAGTAGTAGTGCATTCTGAGAGTATTGAGACCCctccactttttccacattttgttacgttaccgccttattttaaaatggatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908028 lncRNA downstream 172765 35208631 ~ 35208896 (-) True G797846
TU907991 lncRNA downstream 196357 35184859 ~ 35185304 (-) True G797809
TU907973 lncRNA downstream 210358 35171097 ~ 35171303 (-) True G797792
TU907945 lncRNA downstream 227918 35153526 ~ 35153743 (-) True G797764
TU907936 lncRNA downstream 234029 35147423 ~ 35147632 (-) True G797755
TU908439 lncRNA upstream 7791 35406845 ~ 35407564 (-) True G798223
TU908465 lncRNA upstream 41227 35440281 ~ 35446932 (-) True G798248
TU908544 lncRNA upstream 184505 35583559 ~ 35583881 (-) True G798325
TU908559 lncRNA upstream 201749 35600803 ~ 35601047 (-) True G798340
TU908563 lncRNA upstream 204379 35603433 ~ 35603650 (-) True G798344
XM_021615510.2 mRNA downstream 9202 35364052 ~ 35372459 (-) True LOC110531965
XM_036987860.1 mRNA downstream 578827 34729334 ~ 34802834 (-) True LOC110531962
XM_036987861.1 mRNA downstream 585830 34729334 ~ 34795831 (-) False LOC110531962
XM_021615508.2 mRNA downstream 644377 34729334 ~ 34737284 (-) False LOC110531962
XM_021617143.2 mRNA downstream 660345 34715740 ~ 34721316 (-) True LOC110533011
XR_005053231.1 mRNA upstream 96010 35495064 ~ 35521884 (-) False LOC118966032
LOC110531156 mRNA upstream 157813 35556867 ~ 35562538 (-) True LOC110531156
XM_036987869.1 mRNA upstream 165207 35564261 ~ 35566271 (-) True LOC118936388
XM_021615523.2 mRNA upstream 457054 35856108 ~ 35859824 (-) True LOC110531974
XR_005053232.1 mRNA upstream 461591 35860645 ~ 35869013 (-) True LOC118936413
TU908405 other downstream 26986 35354219 ~ 35354675 (-) True G798195
TU907768 other downstream 505782 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 1324112 34051059 ~ 34057549 (-) True G796733
TU904054 other downstream 3353393 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 3719463 31661239 ~ 31662198 (-) True G793842
TU908458 other upstream 92972 35492026 ~ 35521332 (-) True LOC118966032
TU909208 other upstream 578368 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 751284 36150338 ~ 36150637 (-) True G798993
TU910500 other upstream 1428842 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 1945341 37344395 ~ 37345147 (-) True G800318

Expression Profile