RNA id: XM_036987868.1


Basic Information

Item Value
RNA id XM_036987868.1
length 5810
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110531969
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35487368 ~ 35496138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATCATTGGACCGCCCGCCAAGATGGCGACGGTGATTCCCCATAATGGGAGGGTAGGCTTTCTCCTGTCATAATGGAGCAGATGAGGGGTGGGAATCACACCCAGTTGGGCGTGGcatgagacagacacacaccctggGTGTCTCTGTTACCATCCTGCACCCACCCCCACCAAAATGGCCTCCAGCTACCCACCCCCATTCGAGGGCACAGGGGAGGTGAAGGAGGGCTTCCTGTGCCCGCTGTGCCTGAAGGACCTGCAGTCGTTCTACCAGCTCCAGGAACACTACGAGGAGGAGCACTCTGGGGACGATCGACATGTCAGGGGACAACTCAAGAGTCTGGTCCAGAAGGCTAAGAAAGCCAAAGACAAGCTGCTGAAGAGGGATGGTGAAGACAAGCCAGAGACGGGCAGTTATGAGTCCTTCTACTACGGCGGAGTGGACCCTTACATGTGGGAGCCTCAGGAGTTGGGAGCCACAAGAAATCATATGGACTTTTTTAAGAAGCACAGAGCTGCCCGGATTGACCACTATGTCATCGAGGTCAACAAGCTCATTATCAGGCTGGAGAAActgaCATCTTTTGACAGGATGAACATAGATGCAGGCAAAATTAGAGcGATTGAAAAGTCTGTTGTGGCGTGGGTGAGCGACACTGATGTTCCGTTCTGTCCCGACTGCGGGAACAAGTTCAACCTTCGCAACAGGCGACACCACTGCCGCCTCTGTGGCTCCATCATGTGTAGGAAGTGCATGGAGTTTGTGCCCCTGCCTTTGGCTTACAAGCTGACCAGTGGGACTCGGGAGGCCCGTAGTGTTACGGGCAGCCAGTCCCAGTCCCCTCCAACAGGGGGCGGGGGCAATGTCAGCGGGATGGGCTCCAGGAGGGGCAGCATCAGCAGCCTGAGCAGTGTCACCTCAATGCTGGAAGAGAAGGATGACGAGAGGATCCGCTGCTGCCTCCACTGCATGGACACCCTGATGAAGAGACAGCAGAAACTGGAGGAGAAAGACCACGTGCCTGACATTGTCAAGCTCTATGAGAGGCTGAGACTGTGCATGGACAAGGTGGATGAGAGGGCTCCAGAGTATATCAGAATGGCTGAGTCTCTCAATGCTGGAGAGACCACCTATAACCTGGACACGGCTGGTGGACTGAGAATGGAAGTCCAGAAATACTACGAACTGATCGACGCACTGAGTAAGAAGATCTTAACACTGGGAATGAAGGAGGAGCCACAACCCCATCAAAAGACTCTCCAGCTGCAGAGGATGGTCAGATACACAGCCACACTGTTTGTCCAGgAGAAGTTGCTGGGTCTGATGTCTCTACCCACTAAGGACAAGTATGAGGACCTAAAGGAGAAGAGGAagcaggagcaggagaagaggctcacgcaggagagactgATTGCCCAGGTGGCCCAGAAAAGGAGGCAGGACTCTGAGAAGAACCGCCCAGCTGCCAGCACCAATGGGGAGGCTCCCCAGGCCCCCAGGGCCCCCCGCATGACCAAAGCTGGGGGATGGCTGCCCTCTTCTGATACCCTCCACACGTGCGGGGAGCTGGAGGACCCCCTGCTGCAGCAGATAGACAACATCCAGTCATTCTTGCGGCAGGCCAAGGCCGCCCAGAGGCATGACGAAGTGGCCATGCTGGAGGAGAACCTCAGGCAGCTGCAGGATGAGTACGACCAGCAACAGACCAGCTTGGCCATCGCTCTGTCCCAGAGGCTGGCGCAGGAGGAGAGTCTACAGCAGGACGAGCTGCAACgcctggaggacagagagaggggggagagggagcacAGGGCCCAGAGCCAAGCCCCAGGATCCCAGGCCACATACACCTGGCAGGGCTCACTGAACCTAACCGATACAGGGAGCCTccatggggaggaagagggggaggaagaggtgaCACCTAAAGCAGAGAGCAGCCCCCTGTCCATGAGGGCCTTCCCTGCCCTGACCGACCAGGATGAGGAGTCACCCCCCCGGCTGAGGAGGCTGGGGGGAGATGTGACACCTCCTGGTGGCGAGGGACAGAACAGCTCCTCCCTCAACCCCTTTGAGGAGGAAGACTCCACCCCTGTGGAGGATCCTTCCAATCCGTTCTTCGAGGAGATCCAAAAGGAGCACAAGGAGGTGGCTAACGGGAAGAAGGAGTACAACCCGTTTGAGCAGGAAGAGGGTGGGGAGGAAGAGCAGGGGCAGGCCGAGGGCGCCACTGGCAACCCTTTCGAAGTGAAGGAGGAAAACAATGAAGGTAACCCTTTTAAAGAGGCTTCTGGGTGTACCCCGCCGGGAGCCTCGACCAATCCCTTcgagggggaggatgaggaggcgATGCCGGATGTTGACGTGATTGAGGAGGATTTGCTGCTGCAGCAGATCGATAATATACGGGCGTACATATTTGATGCCAAGCTCAACGGGAGGCTAGACGAGGTAGAACTGCTGTCGGAGAACCTGAGAGAGCTGCAGCGCACGCTACAGGAACAGAAGAGcaagacacactgacagacacctcctccctgtctctttctctcatacccccataccattacctgACGCTTACAACAGGGCTGCCCACCCAGGGCTAGAAGGCTACTCCTGAGACGACGGTAGTTCCCTTTAAATGACCAATGATCTCGTTGATACTAGGTTGTGTTAGGTGACGGAATCACCCAGCGCCACCCTTGGTGAGTAGCCCTCCAGAGCCAGGGTCCAGAGGGTGCATCTCAGTCTATACTCCAATAGCCTATactcctttccttcatctgcactgatgtgaataaactgctaataataatagcatttcttctttgccgaTCCTGATTGCCCTACCAAGTGCAGGTCAAGGAGAGGAAGCATCTACAGACTTGAGGCTTTCTCAGGTTTTGACAGCCAAGCCACTAGAAGGATGCCGACCACGAGATGCATTTAGGTTGTGTTTTGATTTTCTCACTCTCGTACTTACTAATAACACTctcactctataaaggtgtctttTAGGAGCCCAGGTTGGTTTTTATTATATTTGTATGGTAAGAAGCACAAGGGCAGAGTATCATCACTTACAGACAGATGTCTGTATTCGGCCACTGGAGAGAGGATTCAAGGGGTCATAAGGGAGGTTATTTGAGGCCAGACATCGATCTGTAGTCCTGCTACACAATAGATATCTCATGTAGAATCAGGGTTGCATTCAAGATCACATGGTTTTGAAAACATTCACTCAAGGGTTGGGCGATATGAGACCTACGATATGCTACTCCAAATACTGCGATAGCTGATATAATTGATTTGCACGTTAATGACCAGATAATTCCAGACTATGCCATTTTTGTCCTTATATTGTATTTAATCACATCGGCCCAACCTTGGTTTACTCTGAATAGTTTAAAATGGCAGCTGTGAGTGCCATGAAAACGTGTTGTCTGCACACAAATGCAGCCCTGAATACTAAGCATGTCTAACCTGTAACCGCTACATTTGTCTGTCAGATCTTCACATACATGTTTGTAGGGGAGTGGAAACTCATTGCCGTTCGCACATAATCTTTTATCTCGGTCTTCTGTCATCCCTGGGGGTCGTGACCACTAGAAGAAAATGTTGAACAAAACATGAGCGAAACCAACAAACTGTTTTTGAAATCCTACTTTGCCTCCTTCAGTTTCTGTAAGCTGGTTTGTGTCTGTTGCAGGATAGATGCATTAGCTTTCAGTGTGTGTACATCACTAGGAGGCACTTCAGCAGTGGTCCAAAGTAGGCTTTCAAAGCTGATATTGTCCTAGTCTCTCATGCTGTTTCTCCTACTGTTCTCTCTTAGTGCACTGAGGGTCAGAATCTGTCCTGCTCTGAACAAATCTAAAGCTCTTTacagggtaaaaaaaaacatcccaTTTACTTTCTCTTATGCCAAGCCTGGTTCAGAATATTGGCCTTTGTCATCCTTATTCAATAGCTGTCTAGTCTTGTAACTTCAGTCTGTATTTAGTGTATTTATGCAACTGATTCAGCAAAGTCTTTCTTGGCATCACTTACCATTAACTCAGAACACCAACAGTTGAGCTGTTTAGGTCTGAGGCACACAGAGTGCTCTGCTTGGCACCTATATCAGCCTGCTCTGTATCCATAAGGTTGTGGCAACTTTAGGATAAAAGACTATCTTGATTAATCTCTTAAAGATAATTTACCTATGACAATAGATTAACACTAAACCTATTCCACGCTACCAAGTATAATTTATACTGTTGGCAAACTCCTGTGTCACCTGTTGAATAAGTACTTTGATGTATCCAAGTACTGGTTCGCTTTCCTTGCAAAGTATACAATAGTACTTGTCATTTTGAACTAAAGCAGTATTGTGTTCGCTGTAATCGATCATGCACCACTAACTCTCAGCTGTGTTGCATCTAAACCAAACATTTTCATACATGAATAATGTATTTGTGGCAAATGTGAATGACTTGTCGAGTAGCTTTGATAATGTTGCCAGTTTGCCTTTTGTTATCGTAGAAGGTTCCGTCACACAACACTAATTAAAGACATGACCTATGTGAACAATAGGATGTGGCCTTTTCATTCACCCACTCCATCGACACGATGTGATAGTGTGTTGCAAAGATTATATACTTTCAACCTCACGAATCTAAGGAGCAGATTCTAGTTCACCGATCTCCAAATCATCATTGTTTACAACAGCTGACAATGAAACTAAATCCTGTCTGGTTTTTAATGTACAGAAACATCCACAATATTTCCAGTGAAACATGATATACTACTAAATAACAGTTCAGTCCATGATTCCTTCCAACCTTAGTCCTGTGCAGCTAGCACCTGAGCGTGGTCTTTCCCTGTCATCTCTTTGGGTGGTGCTGGTCGCAGGGGACCTCCTTTCAGACAGTACTTCTCAGGCCCAAACTTGGCTGGGTTAGCAGCCTCCATCCTGGCTAGAGCCTCCGCTTGCAGGGCCTCGCTGTGAAGGGAGGGATAGGAAAAATAACGACAAGGGGAAGACAAATGAACCAaatcatacatactgtacacataggTTTGCTCCTAGAACTCGGATAGTCGAACTGAAAGTCTGCTCGCATACTCCCTAAAGACCTTCACTTGAACAACCGTAGCAAAAACATAGTCGTAACACTTCTTCAAAATACTCAAATTTAAAGAAGTTCAAAATCAAGTCGATTTTTTTGCAGAGGGTCTTAAGTCACACAATTATACATCTAAGaagtttggtgcagtatttctcaggTGAAAGAAATAGCATGAAAGCTAAGTCTCTCCTTGAATGGCAAACACTTCATGTTCACACTCCTACTGTTGCCCAATCACAGATGAAGGGAGTGTTGACTTCGGCTACTGAACTTTGACCTGACTCAAGAAAAAAAATGTGCGGGCAAACAGCCAACATTTTATAATATGCGCTAATTGTTTCAAATGGGAAGCTTTAGACAAGAGCGTAGCATCTAACCctgtggtcaccaaccttttagGAGTCAAAATATatgccgagatctaccgctctAATTTTGTATTAACATGACTTAAAAaggtaagcctatgcaacattaaccaattaaacagtactttagcaatgaggtttgtgcagtaagctggcccaatacattatcaccacatactggctttgcttgaatttacCTGCCAATGTATTGTTGTttgggacatttaaaaaaaaatgtatttcaaaagttgaggtaggctatatgatcacaccggtaatagatcCCTTGTTACAagtcagaatgttgaataaacttTATTGGAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908209 lncRNA upstream 188 35456469 ~ 35487180 (+) True G798006
TU908204 lncRNA upstream 34799 35446049 ~ 35452569 (+) True G798001
TU908203 lncRNA upstream 38335 35442592 ~ 35449033 (+) True G798000
TU908164 lncRNA upstream 83819 35399714 ~ 35403549 (+) False LOC110531967
TU908272 lncRNA downstream 48697 35544835 ~ 35549100 (+) True LOC110531971
TU908304 lncRNA downstream 99023 35595161 ~ 35595478 (+) True G798100
TU908305 lncRNA downstream 99387 35595525 ~ 35596107 (+) True G798101
TU908311 lncRNA downstream 107451 35603589 ~ 35603874 (+) True G798107
TU908602 lncRNA downstream 136044 35632182 ~ 35632413 (+) True G798382
XM_036987866.1 mRNA upstream 17872 35421565 ~ 35469496 (+) False LOC110531968
XM_021615515.2 mRNA upstream 17872 35421878 ~ 35469496 (+) False LOC110531968
XM_036987865.1 mRNA upstream 17872 35421878 ~ 35469496 (+) False LOC110531968
XM_021615516.2 mRNA upstream 17872 35422299 ~ 35469496 (+) True LOC110531968
XR_002474787.2 mRNA upstream 83819 35399679 ~ 35403549 (+) False LOC110531967
XM_021615518.2 mRNA downstream 48639 35544777 ~ 35551977 (+) False LOC110531971
XM_021615519.2 mRNA downstream 48639 35544777 ~ 35551977 (+) False LOC110531971
XM_036987873.1 mRNA downstream 170284 35666422 ~ 35744420 (+) False LOC110531972
XM_036987871.1 mRNA downstream 170303 35666441 ~ 35744420 (+) False LOC110531972
XM_036987870.1 mRNA downstream 187008 35683146 ~ 35744420 (+) False LOC110531972
TU908119 other upstream 115220 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 930746 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1365628 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2899980 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2984619 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 816991 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1538280 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2071107 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2574078 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 3291923 38788061 ~ 38788354 (+) True G801778

Expression Profile