RNA id: XM_036987869.1


Basic Information

Item Value
RNA id XM_036987869.1
length 1107
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118936388
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35564261 ~ 35566271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATACCTATAAACTTTGCCTGAACGGGTTTCCAACCGCTGCAAGAGGCAAATAACATCCTTTCTAGTTGGTTTGCTATAATTGAAGGTTATCAGAGGTGTTGCGAGTGACAATAGCCAGAACACAAATCTAAGTTACCATGAAGTCCACCTGCCTGATCATTCTGGTATCTCTGGCAGTCTGCAACCTGACCGTGGCTCGAGGACAGAGCATCCCCGATCAAGAGAAAACGGGAGACCGGCAGATAGACGACATCATCCTACAGAGGGCCGAGGGCATCCTGCTCCGCTCCATTCTAAAAATGACAGAGGATGAGGATGGTGTGAATGAGGCATTGTCCTCTCAGCCAGAGTGGCTAGTGAAGCGGCAACACCCTGGTAAACgagaggaggacgaggacgaAGACTCAGGGGAGGTCCAGAAAAGACAGCACCCAGGAAAACGTGAAGACGAAATTGACTCTTTTGTGGAGCTCCAGAAAACGCAGCATCCAGGCAAGCGCTCAATGCTGGAGCAGATTACAGAGAACTCCGCATTTCTAAGTGAACTCTCCAAACGGCAGCACCCGGGCAAGCGCTACCTGATGATGTACAGCAAGCGCCAGCATCCTGGCAGGCGAGATGTGGACGACGAGTCAGACGAAGGGGACCTCCAGGAGTTGGAGAAGCGCCAGCATCCCGGCAAACGTTACTGGTATAACATGAGTCCGGATTTGGGCGCCAACAGTCCCTGTGACGTGCTGGACCCTGGCTGCAGTAAAGCCAACCTGTTGCTCGAGCTGTTAGACAACGTGACAAAGAGTCGCGCCGCGGAGAAGAGACAGCACCCGGGCAAAAGGTCCGCACCTGACGAGGATTTGACTGAACGGGAGTGACGAGTGGGCTGGCGCCTGCGAAATActgtgttgtaaaaaaaaaaatctatgtgtAAATTGATACAAGTAATAATTTCAAGTGATTTATTATGAATATAATATGGACCCCTCTGCCATGGGTAGTCTATAGTTTATTTGGCAAGCTGCTTTTATGACGAATATTCAGAAAACGTCTCCAGAAAGTACTGAGAAATGTTTAAATgagatattattatttttttgttgggggggg

Function

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908465 lncRNA downstream 117329 35440281 ~ 35446932 (-) True G798248
TU908439 lncRNA downstream 156697 35406845 ~ 35407564 (-) True G798223
TU908413 lncRNA downstream 163912 35398481 ~ 35400349 (-) True LOC110531966
TU908028 lncRNA downstream 355365 35208631 ~ 35208896 (-) True G797846
TU907991 lncRNA downstream 378957 35184859 ~ 35185304 (-) True G797809
TU908544 lncRNA upstream 17288 35583559 ~ 35583881 (-) True G798325
TU908559 lncRNA upstream 34532 35600803 ~ 35601047 (-) True G798340
TU908563 lncRNA upstream 37162 35603433 ~ 35603650 (-) True G798344
TU909061 lncRNA upstream 103640 35669911 ~ 35712373 (-) True G798744
TU909175 lncRNA upstream 247121 35813392 ~ 35813652 (-) True G798836
LOC110531156 mRNA downstream 1723 35556867 ~ 35562538 (-) True LOC110531156
XR_005053231.1 mRNA downstream 42377 35495064 ~ 35521884 (-) False LOC118966032
XM_021615511.2 mRNA downstream 164703 35381662 ~ 35399558 (-) False LOC110531966
XM_021615514.2 mRNA downstream 165207 35381661 ~ 35399054 (-) False LOC110531966
XM_021615510.2 mRNA downstream 191802 35364052 ~ 35372459 (-) True LOC110531965
XM_021615523.2 mRNA upstream 289837 35856108 ~ 35859824 (-) True LOC110531974
XR_005053232.1 mRNA upstream 294374 35860645 ~ 35869013 (-) True LOC118936413
XM_036987877.1 mRNA upstream 307883 35874154 ~ 35879299 (-) False LOC118966034
XM_036987878.1 mRNA upstream 307883 35874154 ~ 35879299 (-) True LOC118966034
LOC110531976 mRNA upstream 313026 35879297 ~ 35886033 (-) True LOC110531976
TU908458 other downstream 42929 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 177129 35385853 ~ 35387132 (-) False LOC110531966
TU908405 other downstream 209586 35354219 ~ 35354675 (-) True G798195
TU907768 other downstream 688382 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 1506712 34051059 ~ 34057549 (-) True G796733
TU909208 other upstream 411151 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 584067 36150338 ~ 36150637 (-) True G798993
TU910500 other upstream 1261625 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 1778124 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 3274938 38841209 ~ 38841512 (-) True LOC110532015

Expression Profile