RNA id: XM_021615520.2


Basic Information

Item Value
RNA id XM_021615520.2
length 4321
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110531972
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35666422 ~ 35744420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGTCCCACTGCCACCTTTCTTCAGCTGCTGTTTGGCACAGAGAGAGGCAAAGTTTTGATGTTATCTAATTTACACTCCCAACCACCCTGATTTCTGTACTCTGTTAGTCAGTTTTTCCTCCCTGAATGTCTGTTTTCAGAATGGAAAGATTAAACCCAGATTAAGGAGGGAGTTTTATATAAATAGTTATATGTCCAAGGGTTTTGTTTCTATAAATCCATGTCAAGGTCAAAAAGTTGTTTACAGAAAATTGTTCAGATTTTTTCGTTTTGACCTTTTTTGGAGAACATCCTGTTTCCTCCAGTTTTTTTCTGAGAAACGATTTGCATTGTGCAATACATTTTGATTAATACATATGCAATACATATGATTCATATTCTTGTGTGACAGGTGAAACGAGAACCTTGAGGTGAAAATACATAGTGAAACTATAGGGTTAGGCTACTGTGTTCAAAGAAGGAATAAATGTTCCTCTTATTTCCACCAAGTTgtttgaaataaataaacatgaacAATACAGATCGCGGGCGGTTTGAAATGTCTCTGAcaagtcttttttttttatcacaatcGGAACATGAGCGGATAATGATTGACGTTTGAGCACTTCTTGCACTTGGCTCTAGGCGTGATTGCAGGAGGATGATGTCACCACTTTCACGCCgaggggagggggtgaggagcgtcggggagaggaggatagtcaGGGTTCAGGTACACTAAATCTGTATACATAAATTAGGGGAGTTGGCGTGAGCAAGGGGCGAAGCTCCAGAGCGGGATACATGAATGAAGTCGCCAGACCGACTGAGGGAATAAGGTAACATGGATTGGGAACAAGTACTCCGATTGGAGAATGGCAAGatTGAGCGGTTAGAGGTGAGTGGCTTAGCTCAGACCCCCCAGGCAGTGTCGTGTGGGGAGGATGGGTCTTTCTCTGGGGGTGACGATGGCACCCCGGACCCCCAGCGCACCAAGCAGGCCATCGCCCAGCTGCAGCAGAAAATCCTGAAGCTCACCGAGCAGATCAAGATTGAGCAGACGGCCAGAGACAACAACGTGGCCGAGTACCTCAAACTGGCCAACAACGCTGACAAGCAGCAGAGTGCCCGCATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCAGCCCAGACCATCCAGCAGCTGCAGAGGAAGCTGGAACACTACCACCGCAAGCTGAGGGAGGTGGAGCACAACGGCATCCCTCGCCAGTCCAAGGACGTCCTCAGGGACATGCAGCAAGGCCTAAAGGGTGTGGGGGCAAAGGTCACAGGCTTCAGCGAAGGTGTGGTGGACAGCGTCAAGGGAGGCCTCACCAGCTTCTCGCAGGCCACGCACTCTGCTGCCGCCGGGGTCGTCTCCAAGCCCCGAGAGATCGCCTCGCTGTTCCGCAACAAGTTTGGCAGCGCCGACAACATCCCCGGGCTGAAGGACTCCTTGGATGACCCGTCATGTGTTGAGGAGGGTTTGATGGGGGCCGGGGGGAGGTCTCTGGGCCTCGCAGGCCACCACCACCTGCAGTCCAGTCCCAAGTACGGTAGCGAGGATGACTGCTCCAGCGCTACCTCAGGGTCGGCAGGGGCCAACAGCACGACTGGGGCCCCCGGAGGCCCCCCCAGCTCCAGGAGGAACACCCTGGAGAGGAGCCAGAGCTCCAGCCTGGACATGCTGCTGCAGGAAGTGCAGGAGCTGAGGGAAGGCCAGGGGAGACTAGAGGAGAGTCTGGAGGTACTTAAGAGCCACTATCAGAGGGACTACACTGTCATCATGCAGACCCTACAGGAGGAACGATTCAGGTGTGAGCGTCTGGAGGAGCAGCTGAATGATCTGACAGAGCTTCATCAGAATGAGATCATAAACCTGAAGCAGGAGCTGGCCAGCATGGAGGAGAAGATAGCCTACCAGTCCTACGAGAGAGCCAGAGACTCACAGGAAGCCCTGGAGGCGTGTCAGACACGTATCTCTAAGATGGAgttgcagcagcaacagcagcaggtgGTCCAGCTAGAGGGCTTAGAGAATGCCACAGCCCGGACACTGCTGGGGAAGCTCATCAACGTCCTCCTGGCCCTCATGGCCGTGCTCCTGGTGTTTGTCTCCACCATAGCCAACTGTGTGATCCCCCTGATGAAGACCCGCTCTCGGtccttctccaccctcctcctcatcctgctCTTCGCCTTCATCTGGAGGAACTGGGACGCGCTGTCGGGCTGCTGCACGCACCGCGCCCTGCAGCCACCCAGATGACCGCGTGGAGAGGTGTGGTTCTATGACTACGCATGGGGGTGGAactctgtccacacacacacaataagcaGGATCAGCCTAACTGCCAATGGGATGTGGTGGTTGTGTTGACGGACGCCGAGGAATGAGCCTATCTGTTGAGCTCAGTGAGGTGGGACTGAGGAGAAAgtcagggaaggagggaagatgaGAATACCACTCAATTCATTTAGGAAGAATGAGACTTTGTTTACATTTTTGGAGATCAGAAATAGTTTTTTGCATCCTGATACTGTTTTATTTCCTAGGAGTTAATCAAGTATATTATTGTCGTTATTATTATTtctaatattattatttttattttcatttgtttttattcAGTACCATGTAGCGTTAAGCTCCTCCCACTCTGCACAAAGAGGAGCTGTCAGGAAACTGATTGGAAGTTCACCTCAGGCTCAGGCCCTCTGCAGAGAAATGCTATTCTGATTGTCTGCCTTTCAGGAAGAAAGTGCTCTACCTGGCTGTTATGGGTAGAATATAAAAAGATGAATGAATGCCCTCGCACTTTTCCCCACGCGATGGCTTGATTCTGAGATCAGAAGGAACCTTTCTACCGAGGACTTTTTGTTTCCCGGACAATACTTTGAGTGTCACGCCTAGAGACTCCTCGTGCTTCCGTACATCCTTTTCAATTAAGATAGGTGATATCATGAATGATAATGACTTCTAGAGTGTGGCAACACTTTAGACAAGAGGGAGGGTTTAACAGTTAGGGCCATTCGCCACAGAGCCACCAGAGACCAAAGGTACAAATAAGGCCACTTTGCAGGAAATGTGGAGTTGCCATGATACTGCTTTTTACTGGTGCCCACCCATTGTGTCAGCTGAAGTCCATGTTGAAAAGGAATGCTGCTTTTGCCAGACAAATACAACTGTATCCACTGCCATGCTACTGTTGTTCGATGCGCTGCCTGTATTACGAATGTGACTCACTCCATCACTtacggttctctctctccctttcactctctttTTATCCCCATGTTTCCTCCAATATTCATTCTGTCCTATGTGCCAAAACTCTCCCGTTGCACCTGGTTAATAAATAGGGAGGTTTTtatgttctttctttctttggtaTGTAAAGGGAAAAGACCCAGCGCAGGTCATATAGCCTTGTGGGGATGAGAGGCAAAATGtcaattacaccctattccctttatagtgcaccactttcaCTGTGTATAATAGAGAATAATGTGCCATTTGTGATACAAAACATACAGTTCTCTTCGATGATCAGCCAATTGTACATACGGCCTACTTGTATGTCTCACCTTGGATTTGAGGTGTATGACAAATAATATTAGCCtggttcccagatctgtttgtgctttatTAGCCAACTCCTCTGATTCATGGTCATGACATTGCAGAAGAATTGACTAAACAAAGCACACACTGATATGGAACCAGGCTAACAGAATATACCTTAACAAGGCCACTTCTGAGTAATTGCTCTGAGAAACTCACTGCTAATGATCTGATGTGTGTTTCCTAATCCGGGTCCTTGATTACTGTTGAATATGCTGGCTCTCAATCCATTTTATCCTCCCATTCATTTGTTCAAGGTCCTTCAGTTCAAGGTCCTTCGACCTAACTGACATGAATGAGTCCATCTGAAGTCCAGTCTGCAGCTCCATTAGGAGCTTGTTTGAAGATAATAACTGATATTGGGAATTGCGTTCTGGGACAAGGATGGAGGAACACTACATTTCTTCCTATACATAGCCCTCTCTGGCGGCTTAGGCCTATGTTCAGGATCATTGAAACATATTTAAACCAGAAACTGCACTGAATTTGTGTCTTGATCTTGTGTCTTGATCTTGAACGTGCCACAGGTGAATGGCTCCTGAGTTTACTTCTGACTTTGGTGTGACCTTGCCGTGTCCTCTCTGGTGTTtggtagggtagggttgtgtgCTAAACCACTCGAGTGCCTTCTGATGTCCTTTTCTAAGTGTGGGACAATAAAAGTGCATTCCTGATTAACTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908654 lncRNA upstream 48713 35666465 ~ 35684087 (+) True LOC110531972
TU908603 lncRNA upstream 100055 35632533 ~ 35632745 (+) True G798383
TU908602 lncRNA upstream 100387 35632182 ~ 35632413 (+) True G798382
TU908311 lncRNA upstream 128926 35603589 ~ 35603874 (+) True G798107
TU908305 lncRNA upstream 136693 35595525 ~ 35596107 (+) True G798101
TU908732 lncRNA downstream 35288 35779708 ~ 35802799 (+) False G798498
TU908733 lncRNA downstream 35288 35779708 ~ 35835307 (+) True G798498
TU908804 lncRNA downstream 165344 35909764 ~ 35909972 (+) True G798564
TU908805 lncRNA downstream 166145 35910565 ~ 35910917 (+) True G798565
TU908808 lncRNA downstream 170268 35914688 ~ 35914927 (+) True G798568
XM_021615518.2 mRNA upstream 180823 35544777 ~ 35551977 (+) False LOC110531971
XM_021615519.2 mRNA upstream 180823 35544777 ~ 35551977 (+) False LOC110531971
XM_036987868.1 mRNA upstream 236662 35487368 ~ 35496138 (+) False LOC110531969
XM_021615522.2 mRNA downstream 7592 35752012 ~ 35856104 (+) True LOC110531973
XM_021615528.2 mRNA downstream 141513 35885933 ~ 35893410 (+) False LOC110531975
XM_021615526.2 mRNA downstream 141832 35886252 ~ 35893410 (+) False LOC110531975
XM_021615527.2 mRNA downstream 141833 35886253 ~ 35892716 (+) False LOC110531975
XM_021615524.2 mRNA downstream 141833 35886253 ~ 35893410 (+) False LOC110531975
TU908119 other upstream 360652 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1176178 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1611060 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3145412 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3230051 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 568709 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1289998 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1822825 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2325796 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 3043641 38788061 ~ 38788354 (+) True G801778

Expression Profile