RNA id: XM_021615464.2


Basic Information

Item Value
RNA id XM_021615464.2
length 5198
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110531941
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36249344 ~ 36262924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcggaagtgcgacacTGGAGGAGGTAGTAATTGAGGCGCATTCAATGCAAAACACAAATTGACgaattttgatggggattttttgtTATTTAATTTAGATTTGATGCACCAGTGTATCAATCGACTCTAGGGGATTCTTACATGCGGGACTTTTAATTTGAACATTTCCGACGTTCCCCTGACACGGAAGTACTTTTTTTTAGTGTTGCTGACGAGACgctgatatagtatagtatttCTGAACTGGAGCTAGTGTGCATAGCCAGCAAAGAAGTTTTGAAAGTGATAACAGTAGCTACTGTTTTTGAAACCATCTAAATATATGTGCCACGGAAGTAGGTATTGTAAATGCACAACTACAGCGCATTTCTTGATAACTTCATACTTTCAGCTAGCTAACGTAGTTATGCGTCATAGTACAGGTAAACTGGCTAGCTAACTAATCTGTCTAGCTTGGTAAAGTTAgtctagataacgttagctatctAAATTAGTATGTCAGCTGTACCGTTAATTAGACAAGCACATATGTAGCCAACCATATTTGATGTTAACTGGCTACTTCGTAAAGGTTAGTAGCTAGTTATGTAACGTTATTTAGTTAGCAATATGTTCGGTCATCAACAACGCCTCCAACAGCAGCAACGTATTTGGCAGCTTCCACAACATCTCCAACAACGCCAGCAGCGACAAACAACCCAACTCATGCCATCCCAACTTCCACACCAGCACCAAATGAACCGACCACCACCACCTAGTATGATCTACCTCTGCCCAGTTCCCCGGGCCTCTCTCCTTGTCACCAACCCCATGCTGCAAGGGGCACTGCTCATGCAACAACCGATGCGAGgtaacatgCGAGGCTTGGCCATGGGTAGTGGGCTACCCTTTACTTCATTTTTGTCTGAGGGGACAAGGCAATCTCTCCTTGGACCGGCTCCTATTCCCCAAGTGGGATTGTTCGCATCAGGACCCAATCATTCCCTTACACACTTTTTAAACAAGGACATTCGTGTtaggaagaggaagaaggaacAGACAGGAAGTGCTGGGGGCCAGCTGAGCTCCAGCAGTGCAGAGGGGCTAGGGGAGAGGGATGATAGGACTCCCAATACAGAGATGCAGGAAGCGGAATCAGTTGGACAATTCTTTGCAAAGCAACAGGAGCCTGAGATGAAGAAGCAGAAGATGAATGGGTCAGAAGAGCCTGTGAATATAAAAATTGGACCAGAGGCAGTCCAGAAGTCTGATAATGAAATGTCAACAGATGTACctcagcctgtagATATCTCTGCTCTCGAGTACAGAGGAGGAAGCACTTCCATTAAAGTGGCGGAAGAATGTTGCAAAGAAAGTATAACAGCTGAAGTAGGCACATCCCTGAAAGTCACCATCCAGCAGAGCAGCGAGAGCCGGGCGTTCAGCACAGGCATAGAGGAGTTGGCTGCAGCAACAGCCACGGGGAACCCCtgtggtgtagggggacagggtgAGGACAGTGACAGAGGAGCTGCGACTGACAGCCACTACTGCTACATCTGCAGCAACCCCTACCACAACCAGCAGAATTTCCAGAACCATATGAACGGATTGGAACATCAACAGCGTATGATGGAGATTCAGCAAGTGAGCAATGCCTGTCTGGTCAATCTATTACCACGGGTTGGCGACTCTCTACAGGGTACACACAAAGTCGGGGGCAAAAAGCCAGCAGGGGTGCAGCGCTGGTGTGCAACCTGCCAAACACACTTTACCGGCGACCTCCTCGAGCACCGGAGGACCAAGGAGCACAAGCTATCAAAGCAGTCCTCACGTCCCTTCTGCACCGTCTGCACTCGCCAGTTCAGGACGCCACGGAAGTTTGTGGAGCACATGAAGTCCCGAGAACACAAGCGgaatgtggaggagCTCCAGGAGGAAGGAGAGTCAGAGGTCATTGAAGAACTCATCACTGTGGATGCAGTGGGATGTTTCGAGGGAGAAGATGACTTTGAGGAGGAGACCCACGAGGATGAGGATAGCAGGGGTTCGCAGCCCGATCAAAGAGCAGTCCCGCAAGAGCATGTGGGGGACTACGAAGCGTTTGATTCTGAAACACAATACGGTTCAAGCTTTGTTGTCCCAGTGGCTGGTTTCCTCTGCAGACTGTGCCATAAGTTCTTCTATTTCGAGTCCACGGCCAGGCACTTTCACTGCAAGTCCCTCATACACTTCCAGAACTTACAGAAGTACAAAGCCTTGAAGAATCAAGAGCTCCGCTGCGGAGGACATGAGGATATGCAGCCGAACAGTGGGGGACTCCCCTGACTTGAGAGAATACAAAGTGGTTATCCAAGTGAAAAATGACTGTACAAATGACTGCAACATGGCTAGGGACAACACACATCCCTGTGGTACCTCCTTTACCACAATCAAGATGCATCCTGTTGTCTCTACTCAGGACAAGGCAGAGCAGGACAATATCTCCACTGCCACTCAGCAGGTCTCAGAACAGCTGAACTCAGACTCCGTATTGCCAAATACCTCCGTCGCTGTCCATAGGCCTCAATCCACAGCCTCCTTCTGGCTCAAGCTGTGGATTGAAGAACACGGTGAAGCCGTCTCCATGCCAAAGCTGCCAAAGGTCCCAACCGAGCCTCCAGGAGTATGGGCATGATGTGACTGGAGAAAAATGCTCCTGCAGAGGTGGATGTGCTCTTGCTTTGCATGCAGGGCAACAGGAAACAAACATGAGCATACCTCAAACTGCAAGCGAGCCACTACGAGGCAGCCTCTTGGAAAGAGAGCATTTGGAGCAGGGGAGCTCCGCGCTGTTGATGCCACATATACTCGAACATTTGGTGTGTGTGCGAGTTTGAAGTCGCCCAAGATAAGATTTCACAGACAAATCCTGTTTGGTTACAGTAAAGTAGGCCTAGTTTAGTTTGAATGGAATCAACAgtttgtgttactattttattaAGTGATAGCATTCATAGTATTGCAAGGGATCTCCTATCACAGTGAGTGAGGCcatattatgtttttttttttaaagaaagtgcctcaggtctttgacaatttctagggccttcctctgacaccgcctggtgtagaggtcctggatggcaggcagcttagccccagtgatgtactgggccgtacgcactaccctctgtagtgccttgcggtcggacgccgagcaattgctgtaccaagcagcgatgcaaccaggatgctctcgatgttgcagctgtagaaccttttgaggatctgaggacccaagccaaatctttttagtctacTGAGAggaaataggctttgtcatgccctcttcacgactgtcttggtgtgtttggaccattctagtttcaattccgacttcaactgtatgggcCACACCTGTTTCCATCTATTCTTATTCTAGGATTTGCAGTtcgctgtagcttatgctttgaGGTGATCAACATTATTGATGCTGGTTTGAGAGAGGGTGGATTAAGTTATTTTAAgctaggtaattaactaaatataTCATCTGATGCATGCATTTCATCTTGTGACTTGCATTACCATGCTAGAGGACACACTTCGGCAAATCAGTATAGAAcctttctgtgtttgcaaacatttataCACAAGGGCGATCGGTGCAAGTTGGTGGCAGAACAAGGAGATATTTGGATTTTAAGACTCGTATGAATCAATGTCCTACTTAATATAATGCGTCATCATCGCAAATCATCTGCATTATACTTAAACACTTTACaatctttttttgtgtgttatttcttacattattagcccagataGTTTTTTGATATCAGAGCAgcagtaactcaccagcattacgaccacaAATACGACTTTCCCGAGTTGGATCCTTCTCCACCGgcagagaagaggtattcgggGTGGACTTCTAGTcagactcaggaggcgtgcacaccatccactacttccgagtatattactcgctaatgttcagtctctgaaCAATAAACTAGAACCGTTTAGGGTGAGGATTGTTTTCCAGAgtgacatcagggactgtaacatactgtttcacagaatcatggctctcttgggatatactgtccccgtccatacatcATCATACATCATGCAGACAGTAATGAagaactctctgggaagaagggcggttgtgtatgtttcatgattaactactcatggtgtgattgtgatgaCATACAGACACTCAAGTAATTTTGTTCACCTCACCTAGAATacatcacaatcaaatgccgactgaATTATCTCCCCAAGAGAAtaatcttcggttatagtcacagccatatatattccccttcaagccgataccacgacggccctcaaggaactacactggacttaatgcaaactggaaacaacatatcctgaggccgcatttattgtagctggggattttaacaaaccAAAGTTGAGGAAAatgctaccgaagttctatcacCACATTGTAGTATTTGCTGTTCATTGACGTttgctcagccttcaacaccatagtaccctccaagctcatcattacgctcggggccctgggtctgaaccgcccccaggtggtaaaggtaggaaacaacatttccactttgctgatcctcatcACATGGGCCCCACAAGGGAGAGGGGgctgactgtgtggccacgcacgacaccaactcaatcatcaagtttgcagacgactcaacagtagtaggcctgatttccaacagtgacgagacagcctacagggaggtgagggccctggcggttgtggtgccaggaaaataacctctctccTTAACGTCAATAAAACTAggaagctgattgtggacttcgaTGTGGATGCACGCCActatcgacgggaccgcagtggagaaggtggaacgctTCAAAATCCTGGGCGTACACATTATCTGAAATTAAATGGTCCACACAGACGATTTcaagaaagtgttttactcaattgtTTCGATCAATGTTGAGCTCATCCGCAATGTGAtgaattataaatagtaatttctattagctaattcatattgtggtTTCTGTCAGCTGAGGGTTAGCTAAATATGACTGCTTGTGCTACTTCAATCTTTCCTTAGTTAgcgctaggactaatgtagcctacattttccagtttggatgattgtgtatgCTGTTGCTACTtttgtgaatgtctgaacattggatccaaaaataaactggtcacGTTCACGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909420 lncRNA upstream 12195 36236949 ~ 36237149 (+) True G799011
TU908957 lncRNA upstream 13800 36152526 ~ 36235544 (+) False G798672
TU908942 lncRNA upstream 13800 36234102 ~ 36235544 (+) False G798672
TU908944 lncRNA upstream 13800 36234102 ~ 36235544 (+) False G798672
TU908948 lncRNA upstream 13800 36234102 ~ 36235544 (+) False G798672
TU909436 lncRNA downstream 40148 36303072 ~ 36303901 (+) True G799026
TU909506 lncRNA downstream 119112 36382036 ~ 36382235 (+) True G799089
TU909508 lncRNA downstream 120212 36383136 ~ 36383353 (+) True G799091
TU909519 lncRNA downstream 135277 36398201 ~ 36399373 (+) True G799096
TU909511 lncRNA downstream 136900 36399824 ~ 36402989 (+) False G799094
XM_021615528.2 mRNA upstream 355934 35885933 ~ 35893410 (+) False LOC110531975
XM_021615526.2 mRNA upstream 355934 35886252 ~ 35893410 (+) False LOC110531975
XM_021615524.2 mRNA upstream 355934 35886253 ~ 35893410 (+) False LOC110531975
XM_021615525.2 mRNA upstream 355934 35886253 ~ 35893410 (+) True LOC110531975
XM_021615527.2 mRNA upstream 356628 35886253 ~ 35892716 (+) False LOC110531975
XM_021615449.2 mRNA downstream 123994 36386918 ~ 36396094 (+) True si:dkey-7l6.3
trnap-agg-57 mRNA downstream 209983 36472907 ~ 36472978 (+) True trnap-agg-57
trnap-agg-58 mRNA downstream 211212 36474136 ~ 36474207 (+) True trnap-agg-58
trnap-agg-59 mRNA downstream 213846 36476770 ~ 36476841 (+) True trnap-agg-59
trnap-agg-60 mRNA downstream 215077 36478001 ~ 36478072 (+) True trnap-agg-60
TU908119 other upstream 877196 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1692722 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2127604 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3661956 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3746595 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 50205 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 771494 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1304321 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1807292 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2525137 38788061 ~ 38788354 (+) True G801778

Expression Profile