RNA id: XM_021615453.2


Basic Information

Item Value
RNA id XM_021615453.2
length 4393
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110531936
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36335384 ~ 36369350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCCAAAACATGGCTTGTGCTTAAGGAGCTGCATCCCGGGATATGTAGTCAGTCATTTAGCGACATACATCCAATTCCAAATGCTTTACCCATCAAAACACAACAAGGACCATGATGCTGCTCGAAATTGCGCATGGGATATCAGACAGCCGATAACCCGTCTATTATGCTACTTCGCTGAAATAAAAAGGTACCGGAAAACTGCGAGCGAACAACCATTGGAGCCACTTGAGAAAGTAATAAAGGCACATACACCCAGGTGGTGATGGGATGTGTGTACTGCTGGAGGAATAATGAGCTGAAAGAGGAGCAAAGTATCTATTGAAAACACTAGACTCAGACGTTTTGTAGAACAGGGAAGAAGTGCTCTCCTGTTGCCAGTATGTCGGCTGTTCCTGCGTCCGCCCCAGCACTTGTCAATCCCTCGCCACCAGAGTTCACCAACCCCAACAAGCCTGGCCGGAAAACAAACCAACTACAGTACATGCAGAACGTTGTGGTGAAGACTCTATGGAAGCATCAGTTTGCGTGGCCCTTTTACACACCTGTGGATGCCATCAAATTATGTCTCGCCGACTATCATAAAGTTATCAAGAGCCCaatggacatgggaacaataaagAAGAGGCTAGAGAATAACTACTACTGGAGTGCCAGCGAGTGTATGCAGGACTTCAATACAATGTTTACTAACTGTTATATCTACAACAAGCCTACAGATGACATTGTGCTGATGGCCCAAGCTCTAGAGAAGATATTCTTACAGAAAGTGGCCCAAATGCCTCAGGAGGAGGTGGAGCTGCTACCACCGGTGCCCAAAGTCAAAGCAGCCCGCAAACCAGGAGGGCCCGTTAGTGCAGAGAGCCAAGCACAGGGTGAGTCGACGGATTCACCCCCATCTTCTTACCCCAGCTCCCCTCCACTTCTGTCTCAGACACCTGTCATAGCAGCCACGCCAGTGCCAACCATTACATCTGTTACCCCTGTCCGAGCTGTGCCTACTGCTGCCTCCATGATGGCTGTGGTTCCAACGGCACAGCCAGTCATCAAAAAAAAGGGGGTCAAGCGGAAAGCAGACACAACAACTCCCACGACCTCAGCAATCTCGGCCAGTAGAAGTGACTCCCCTACCCAGCTCCTAGAATCCAAACAGGAGAATGTCTTGTCCAGGCGGGAGAGCACAGTGCGGTCCGTCAAGCCCCCCAAGAAGGACACAGAGGATGGAGAGGCGCCCCTGCTCAGTGGCAAGAAAGGCAAGCTCGGCGAGCAGCTGAAGCACTGCGAAGTCATCCTGAAGGAGATGCTGTCCAAGAAGTACACGGCCCACGCTTGGCCTTTCTACAAGCCTGTAGATGCAGAAGCGCTAGAACTGCATGACTACCATGAGATAATCAAACACCCCATGGACCTGAGCACTGTCAAAAAAAAAATGGACAGTCGAGATTACCAAGATGCCCAAAGCTTTGCGACAGATGTCCGGTTAATGTTTTCAAATTGCTACAAGTACAACCCCCCCGACCACGAGGTTGTTGCGATGGCCAGGAAGCTCCAGGATGTGTTTGAGATGCGATTTGCCAAGATGCCGGACGAGCCCATCGAAGCCACCCAGCTCTCCACCATGCCGGTGGTAAGCAAGAGTACAGAGAGCAGTGAGAGCAGCGGCAACACCTCCAGTTCGGAGAGCTCCGACTCAGAGGAGGAGCGGGCCACGCGGCTCGCCGAACTGCAGGAACAGGTGGGTTCGGAACAGCAAATCACTGTGGAGCACCCCAATGGTAACAGGGCGGGGGGAAAAAACGGGTGTGCCAAACGTTTTCAGCTGAAGGCCGTTCATGAACAGCTGGCTGTTCTGTCGCAGGCCCCAGTAAGTAAACCAAAGAAAATGGAGAAAAAGCAAAAAGATAAgaagaaagacaaagagaaagacaaagcCAACAAGGGGAAGGCTGATGACGAGAAGAAGCCCAAGTCAACACAGCAAACCAAGCCAGCTAATCAGAAGAAGGCTCCAGCCCGGAAACCAAACCGCACGGGGGCGGCTACCAGGCAAACAAAGAAAGGGACCAAGGTGGCGGTGGCGAACAACGAGTCTGAAGAGGAGCCGTCCCTTCCCATGTCATACGACGAGAAGCGCCAGCTTAGCCTGGACATCAACCGTCTTCCGGGTGAGAAGTTGGGCAGGGTGGTCCACATCATCCAGGCCCGGGAGCCTTCCCTGCGTGACTCCAATCCGGACGAGATAGAGATAGACTTTGAGACACTCAAGCCCTCTACCCTTCGTGAGCTCGAACGATACGTCAAGTCCTGTTTGCAAAAAAAGCAGCGGAAACTTTTACAGAAGGCAGGCTCGGCTCTAGCAGGGGGCGCCTCTCGAATGAGTGGCAGCAGCAGCTCTTCTGACTCTGGCAGCAGCAGCTCCAGTGGCTCCAGCTCAGAAAGCAGTGACTCCGATTGATCAGAGAAAGACCCACATACAGTCCAGTCCCTCTCTTACCGTAGTTAATTTACCCCCCTTTCTAGCTAGTAGTctactctctttttttcttcccCTGGATGACTTTTATAAGATAATGAAAATACTTTTGATGACGAGGATATTGCTAATGTTTTGTATTTAGAAATGCCTTTAAAGAAAAACATAGGAAACGTGTAAGAAGATATAGCTGACTGAACATAGTCAGGATTTGTTTTTGCTGGCCCTTAAAGGGAAATGCCTGGTATCACCAGAACAACATGCGTTTAGttaatattataattttttaaagaCTATGTTACATAAGTAGTAAACCGTTAAGAAACACTGAGATTGATTTTGGTTTGGACAAAATTGTCTCAAGGAACAAATATGGTCTTTCTCTTCCTGGGATGGCTGTTGCCTCTAGTTTGACCTTTGCCACCACACattattccttttttttttttttttttttttcggttTTATGGATACAGCTATATTTAAGAAATTAAGATAATTGTTATTTTTATGGTCATACATACAATTTTTGTTGACAATGTAAAACAAATGGTTTTAACGATCATCTATAGAAGATAATTGATAACTGTTTATTTTTGTTCTCAATCTTCCATTCTCCATTCAGTGTTTGTAAATCTGTTGTCTCAAGGGTCTGTTCAATGTAGTTGGCGGTTAACACTAGACTGCGATTGAGTGATACATTGACTTAATCATGGCCCTACCTATTTACTGAGTGTTTTATCTACACATTTATGGCAAAGTAAAGTTGCTGTTTGATACATTTTCTGATTGTCTTAAAGATTATTTTTGAGTCTCATGCTTTGATATTCTGTCCACAGTATGTGGTGGCATATACAAATTCACTTTTTGCAGCCAGTGTTAATGTTAAATGCTCCCCTACTAAGATGtaacacacatcacacactctTGTGGTTTGTTTCCCAGCCTGTTTGTATATTTGGCATGTGCCATATCTGACAACTTTCATTATTGAATGTTATAACTTTTTCCTTTGTCTGTGTTTGAGCTAGTCTTTCATTTGAACATTATGGTTGTATTCCATATgtaggtgaattaacactcacaGTATAGCCTGTTTCTTTTAAGAGTGGAGAGCAATgggctctctgtctcctctgcgTAAACAACTAATCGCCACGTGTACAAAAACGTACACAAGACAGGAAATTAGAATCTAAAAGTAAATAATCGTATTGTTATTTTGTTCATATTTGAGCATTACAAAGACCTCTGTAAACAGAACTAGGTAGATGTGTCATAATACACAACCTAGTCTTCCTTCCAAATTCAGAATCATGAATTCAAACTCTTTGGTTACCTTTTACAATACACCTGTTGTGACTGGATTTTTACAATTATGTATCTGTAATTTCTGAGATGGTAAGTGTATTTTCTATCAATTTTAGATAATTTACAACTGCAGTTCACGAAGCTGAGATCATTTGGTTAGTTGTTAGTAGTGGTGATGTTTTAAACTTGATCTGCTAAATCCCCATTAACCTCATTATACAGATTCAGACAACCtcttacataaaaaaaaaaagctgtttttgcCTGAGGGATGTCATACGAATTGTTTTCACCATATTCACTTATTTGTTCATTTTAGTTCTTGTTCAACATATAATAGATCATTTTTATATTTTAATAAAATCATTTTATGTATTTGCATGCACTCCTGCTGTAACTTTCTGAAATATTTTTTAGCACTGTATTGTAACTTCTGTAGACATCAATCTTTGAGAATTAAAGATTTGTGTTGTAGTTTTAGGGTTTAAGGGTGAAATTACATAGGGATGCTGGGCAAACAAAAAGTTAATATTTGATGTAATTATTTACATGGGATACCATATTTTTCTGAGTTCCTTTGTTTTCATAAATAAACCACATAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909545 lncRNA downstream 72475 36259961 ~ 36262909 (-) True G799117
TU909428 lncRNA downstream 91330 36243847 ~ 36244054 (-) True G799019
TU909366 lncRNA downstream 99751 36233938 ~ 36235633 (-) False G798995
TU909598 lncRNA upstream 10025 36379375 ~ 36379691 (-) True G799170
TU909625 lncRNA upstream 47000 36416350 ~ 36416599 (-) True G799192
TU909626 lncRNA upstream 50476 36419826 ~ 36420085 (-) True G799193
TU909629 lncRNA upstream 67901 36437251 ~ 36437461 (-) True G799196
TU909646 lncRNA upstream 76820 36446170 ~ 36453033 (-) False G799207
XM_021615459.2 mRNA downstream 16732 36294438 ~ 36318652 (-) True snap29
XM_021615460.2 mRNA downstream 16830 36294438 ~ 36318554 (-) False snap29
XM_021615462.2 mRNA downstream 16851 36294438 ~ 36318533 (-) False snap29
XM_036987897.1 mRNA downstream 225340 35980798 ~ 36110044 (-) False LOC110531157
trnag-ucc-139 mRNA upstream 91456 36460806 ~ 36460877 (-) True trnag-ucc-139
trnag-ucc-140 mRNA upstream 92855 36462205 ~ 36462276 (-) True trnag-ucc-140
trnag-ucc-141 mRNA upstream 94258 36463608 ~ 36463679 (-) True trnag-ucc-141
trnag-ucc-142 mRNA upstream 95661 36465011 ~ 36465082 (-) True trnag-ucc-142
trnag-ucc-143 mRNA upstream 97064 36466414 ~ 36466485 (-) True trnag-ucc-143
TU909355 other downstream 184747 36150338 ~ 36150637 (-) True G798993
TU909208 other downstream 356269 35977422 ~ 35979115 (-) True LOC110531979
TU908458 other downstream 814052 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 948252 35385853 ~ 35387132 (-) False LOC110531966
TU908405 other downstream 980709 35354219 ~ 35354675 (-) True G798195
TU910500 other upstream 458546 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 975045 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 2471859 38841209 ~ 38841512 (-) True LOC110532015
TU912768 other upstream 2597106 38966456 ~ 38996032 (-) True G802100
TU912807 other upstream 2681180 39050530 ~ 39061381 (-) True G802138

Expression Profile