RNA id: trnap-agg-58



Basic Information


Item Value
RNA id trnap-agg-58
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-58
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36474136 ~ 36474207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909637 lncRNA upstream 14718 36447598 ~ 36459418 (+) True G799200
TU909636 lncRNA upstream 17541 36446170 ~ 36456595 (+) False G799200
TU909635 lncRNA upstream 21102 36447598 ~ 36453034 (+) False G799200
TU909638 lncRNA upstream 26046 36446401 ~ 36448090 (+) True G799201
TU909524 lncRNA upstream 63319 36410613 ~ 36410817 (+) True G799101
TU909654 lncRNA downstream 1889 36476096 ~ 36495052 (+) True G799214
TU909656 lncRNA downstream 49177 36523384 ~ 36523664 (+) True G799216
TU909658 lncRNA downstream 62031 36536238 ~ 36536482 (+) True G799218
TU909659 lncRNA downstream 64091 36538298 ~ 36538499 (+) True G799219
TU909661 lncRNA downstream 89185 36563392 ~ 36585315 (+) True G799221
trnap-agg-57 mRNA upstream 1158 36472907 ~ 36472978 (+) True trnap-agg-57
XM_021615449.2 mRNA upstream 78042 36386918 ~ 36396094 (+) True si:dkey-7l6.3
XM_021615464.2 mRNA upstream 211212 36249344 ~ 36262924 (+) False LOC110531941
trnap-agg-59 mRNA downstream 2563 36476770 ~ 36476841 (+) True trnap-agg-59
trnap-agg-60 mRNA downstream 3794 36478001 ~ 36478072 (+) True trnap-agg-60
trnap-agg-61 mRNA downstream 5023 36479230 ~ 36479301 (+) True trnap-agg-61
trnap-agg-62 mRNA downstream 7657 36481864 ~ 36481935 (+) True trnap-agg-62
trnap-agg-63 mRNA downstream 8886 36483093 ~ 36483164 (+) True trnap-agg-63
TU909468 other upstream 157331 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1101988 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1917514 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2352396 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3886748 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 560211 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1093038 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1596009 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2313854 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2458745 38932952 ~ 38933868 (+) True G801851