RNA id: trnap-agg-59


Basic Information

Item Value
RNA id trnap-agg-59
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-59
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36476770 ~ 36476841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909637 lncRNA upstream 17352 36447598 ~ 36459418 (+) True G799200
TU909636 lncRNA upstream 20175 36446170 ~ 36456595 (+) False G799200
TU909635 lncRNA upstream 23736 36447598 ~ 36453034 (+) False G799200
TU909638 lncRNA upstream 28680 36446401 ~ 36448090 (+) True G799201
TU909524 lncRNA upstream 65953 36410613 ~ 36410817 (+) True G799101
TU909656 lncRNA downstream 46543 36523384 ~ 36523664 (+) True G799216
TU909658 lncRNA downstream 59397 36536238 ~ 36536482 (+) True G799218
TU909659 lncRNA downstream 61457 36538298 ~ 36538499 (+) True G799219
TU909661 lncRNA downstream 86551 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 134026 36610867 ~ 36622475 (+) True trnap-agg-149
trnap-agg-58 mRNA upstream 2563 36474136 ~ 36474207 (+) True trnap-agg-58
trnap-agg-57 mRNA upstream 3792 36472907 ~ 36472978 (+) True trnap-agg-57
XM_021615449.2 mRNA upstream 80676 36386918 ~ 36396094 (+) True si:dkey-7l6.3
XM_021615463.2 mRNA upstream 213846 36249347 ~ 36262924 (+) False LOC110531941
trnap-agg-60 mRNA downstream 1160 36478001 ~ 36478072 (+) True trnap-agg-60
trnap-agg-61 mRNA downstream 2389 36479230 ~ 36479301 (+) True trnap-agg-61
trnap-agg-62 mRNA downstream 5023 36481864 ~ 36481935 (+) True trnap-agg-62
trnap-agg-63 mRNA downstream 6252 36483093 ~ 36483164 (+) True trnap-agg-63
trnap-agg-64 mRNA downstream 8712 36485553 ~ 36485624 (+) True trnap-agg-64
TU909468 other upstream 159965 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1104622 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1920148 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2355030 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3889382 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 557577 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1090404 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1593375 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2311220 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2456111 38932952 ~ 38933868 (+) True G801851