RNA id: trnap-agg-70


Basic Information

Item Value
RNA id trnap-agg-70
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-70
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36498005 ~ 36498076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattcttgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909654 lncRNA upstream 2953 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 38587 36447598 ~ 36459418 (+) True G799200
TU909636 lncRNA upstream 41410 36446170 ~ 36456595 (+) False G799200
TU909656 lncRNA downstream 25308 36523384 ~ 36523664 (+) True G799216
TU909658 lncRNA downstream 38162 36536238 ~ 36536482 (+) True G799218
TU909659 lncRNA downstream 40222 36538298 ~ 36538499 (+) True G799219
TU909661 lncRNA downstream 65316 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 112791 36610867 ~ 36622475 (+) True trnap-agg-149
trnap-agg-69 mRNA upstream 1160 36496774 ~ 36496845 (+) True trnap-agg-69
trnap-agg-68 mRNA upstream 3965 36493969 ~ 36494040 (+) True trnap-agg-68
trnap-agg-67 mRNA upstream 6770 36491164 ~ 36491235 (+) True trnap-agg-67
trnap-agg-66 mRNA upstream 9575 36488359 ~ 36488430 (+) True trnap-agg-66
trnap-agg-65 mRNA upstream 10978 36486956 ~ 36487027 (+) True trnap-agg-65
trnap-agg-71 mRNA downstream 1160 36499236 ~ 36499307 (+) True trnap-agg-71
trnap-agg-72 mRNA downstream 2391 36500467 ~ 36500538 (+) True trnap-agg-72
trnap-agg-73 mRNA downstream 3622 36501698 ~ 36501769 (+) True trnap-agg-73
trnap-agg-74 mRNA downstream 4853 36502929 ~ 36503000 (+) True trnap-agg-74
trnap-agg-75 mRNA downstream 6084 36504160 ~ 36504231 (+) True trnap-agg-75
TU909468 other upstream 181200 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1125857 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1941383 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2376265 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3910617 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 536342 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1069169 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1572140 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2289985 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2434876 38932952 ~ 38933868 (+) True G801851