RNA id: trnap-agg-81


Basic Information

Item Value
RNA id trnap-agg-81
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-81
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36511547 ~ 36511618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattcttgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909654 lncRNA upstream 16495 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 52129 36447598 ~ 36459418 (+) True G799200
TU909636 lncRNA upstream 54952 36446170 ~ 36456595 (+) False G799200
TU909656 lncRNA downstream 11766 36523384 ~ 36523664 (+) True G799216
TU909658 lncRNA downstream 24620 36536238 ~ 36536482 (+) True G799218
TU909659 lncRNA downstream 26680 36538298 ~ 36538499 (+) True G799219
TU909661 lncRNA downstream 51774 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 99249 36610867 ~ 36622475 (+) True trnap-agg-149
trnap-agg-80 mRNA upstream 1160 36510316 ~ 36510387 (+) True trnap-agg-80
trnap-agg-79 mRNA upstream 2391 36509085 ~ 36509156 (+) True trnap-agg-79
trnap-agg-78 mRNA upstream 3622 36507854 ~ 36507925 (+) True trnap-agg-78
trnap-agg-77 mRNA upstream 4853 36506623 ~ 36506694 (+) True trnap-agg-77
trnap-agg-76 mRNA upstream 6085 36505391 ~ 36505462 (+) True trnap-agg-76
trnap-agg-82 mRNA downstream 1160 36512778 ~ 36512849 (+) True trnap-agg-82
trnap-agg-83 mRNA downstream 2391 36514009 ~ 36514080 (+) True trnap-agg-83
trnap-agg-84 mRNA downstream 3622 36515240 ~ 36515311 (+) True trnap-agg-84
trnap-agg-85 mRNA downstream 4853 36516471 ~ 36516542 (+) True trnap-agg-85
trnap-agg-86 mRNA downstream 6084 36517702 ~ 36517773 (+) True trnap-agg-86
TU909468 other upstream 194742 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1139399 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1954925 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2389807 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3924159 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 522800 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1055627 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1558598 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2276443 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2421334 38932952 ~ 38933868 (+) True G801851