RNA id: trnap-agg-97


Basic Information

Item Value
RNA id trnap-agg-97
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-97
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36535442 ~ 36535513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909656 lncRNA upstream 11778 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 40390 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 76024 36447598 ~ 36459418 (+) True G799200
TU909635 lncRNA upstream 82408 36447598 ~ 36453034 (+) False G799200
TU909638 lncRNA upstream 87352 36446401 ~ 36448090 (+) True G799201
TU909658 lncRNA downstream 725 36536238 ~ 36536482 (+) True G799218
TU909659 lncRNA downstream 2785 36538298 ~ 36538499 (+) True G799219
TU909661 lncRNA downstream 27879 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 75354 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 95778 36631291 ~ 36631528 (+) True G799239
trnap-agg-96 mRNA upstream 1161 36534210 ~ 36534281 (+) True trnap-agg-96
trnap-agg-95 mRNA upstream 2386 36532985 ~ 36533056 (+) True trnap-agg-95
trnap-agg-94 mRNA upstream 6073 36529298 ~ 36529369 (+) True trnap-agg-94
trnap-agg-93 mRNA upstream 7304 36528067 ~ 36528138 (+) True trnap-agg-93
trnap-agg-92 mRNA upstream 8535 36526836 ~ 36526907 (+) True trnap-agg-92
trnap-agg-98 mRNA downstream 1332 36536845 ~ 36536916 (+) True trnap-agg-98
trnap-agg-99 mRNA downstream 3966 36539479 ~ 36539550 (+) True trnap-agg-99
trnap-agg-100 mRNA downstream 5369 36540882 ~ 36540953 (+) True trnap-agg-100
trnap-agg-101 mRNA downstream 6772 36542285 ~ 36542356 (+) True trnap-agg-101
trnap-agg-102 mRNA downstream 9234 36544747 ~ 36544818 (+) True trnap-agg-102
TU909468 other upstream 218637 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1163294 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1978820 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2413702 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3948054 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 498905 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1031732 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1534703 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2252548 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2397439 38932952 ~ 38933868 (+) True G801851