RNA id: trnap-agg-116


Basic Information

Item Value
RNA id trnap-agg-116
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-116
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36563999 ~ 36564070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattcttgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909659 lncRNA upstream 25500 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 27517 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 40335 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 68947 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 104581 36447598 ~ 36459418 (+) True G799200
TU909664 lncRNA downstream 46797 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 67221 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 75760 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 81240 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 81614 36645684 ~ 36646031 (+) True G799250
trnap-agg-115 mRNA upstream 1332 36562596 ~ 36562667 (+) True trnap-agg-115
trnap-agg-114 mRNA upstream 2735 36561193 ~ 36561264 (+) True trnap-agg-114
trnap-agg-113 mRNA upstream 3966 36559962 ~ 36560033 (+) True trnap-agg-113
trnap-agg-112 mRNA upstream 5197 36558731 ~ 36558802 (+) True trnap-agg-112
trnap-agg-111 mRNA upstream 6600 36557328 ~ 36557399 (+) True trnap-agg-111
trnap-agg-117 mRNA downstream 1160 36565230 ~ 36565301 (+) True trnap-agg-117
trnap-agg-118 mRNA downstream 2391 36566461 ~ 36566532 (+) True trnap-agg-118
trnap-agg-119 mRNA downstream 3618 36567688 ~ 36567759 (+) True trnap-agg-119
trnap-agg-120 mRNA downstream 4845 36568915 ~ 36568986 (+) True trnap-agg-120
trnap-agg-121 mRNA downstream 6237 36570307 ~ 36570378 (+) True trnap-agg-121
TU909468 other upstream 247194 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1191851 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2007377 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2442259 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3976611 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 470348 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1003175 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1506146 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2223991 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2368882 38932952 ~ 38933868 (+) True G801851