RNA id: trnap-agg-117


Basic Information

Item Value
RNA id trnap-agg-117
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-117
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36565230 ~ 36565301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgtgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909659 lncRNA upstream 26731 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 28748 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 41566 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 70178 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 105812 36447598 ~ 36459418 (+) True G799200
TU909664 lncRNA downstream 45566 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 65990 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 74529 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 80009 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 80383 36645684 ~ 36646031 (+) True G799250
trnap-agg-116 mRNA upstream 1160 36563999 ~ 36564070 (+) True trnap-agg-116
trnap-agg-115 mRNA upstream 2563 36562596 ~ 36562667 (+) True trnap-agg-115
trnap-agg-114 mRNA upstream 3966 36561193 ~ 36561264 (+) True trnap-agg-114
trnap-agg-113 mRNA upstream 5197 36559962 ~ 36560033 (+) True trnap-agg-113
trnap-agg-112 mRNA upstream 6428 36558731 ~ 36558802 (+) True trnap-agg-112
trnap-agg-118 mRNA downstream 1160 36566461 ~ 36566532 (+) True trnap-agg-118
trnap-agg-119 mRNA downstream 2387 36567688 ~ 36567759 (+) True trnap-agg-119
trnap-agg-120 mRNA downstream 3614 36568915 ~ 36568986 (+) True trnap-agg-120
trnap-agg-121 mRNA downstream 5006 36570307 ~ 36570378 (+) True trnap-agg-121
trnap-agg-122 mRNA downstream 6395 36571696 ~ 36571767 (+) True trnap-agg-122
TU909468 other upstream 248425 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1193082 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2008608 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2443490 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3977842 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 469117 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1001944 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1504915 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2222760 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2367651 38932952 ~ 38933868 (+) True G801851