RNA id: trnap-agg-128


Basic Information

Item Value
RNA id trnap-agg-128
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-128
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36580054 ~ 36580125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909659 lncRNA upstream 41555 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 43572 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 56390 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 85002 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 120636 36447598 ~ 36459418 (+) True G799200
TU909664 lncRNA downstream 30742 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 51166 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 59705 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 65185 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 65559 36645684 ~ 36646031 (+) True G799250
trnap-agg-127 mRNA upstream 1322 36578661 ~ 36578732 (+) True trnap-agg-127
trnap-agg-126 mRNA upstream 2715 36577268 ~ 36577339 (+) True trnap-agg-126
trnap-agg-125 mRNA upstream 4108 36575875 ~ 36575946 (+) True trnap-agg-125
trnap-agg-124 mRNA upstream 5501 36574482 ~ 36574553 (+) True trnap-agg-124
trnap-agg-123 mRNA upstream 6894 36573089 ~ 36573160 (+) True trnap-agg-123
trnap-agg-129 mRNA downstream 1322 36581447 ~ 36581518 (+) True trnap-agg-129
trnap-agg-130 mRNA downstream 2715 36582840 ~ 36582911 (+) True trnap-agg-130
trnap-agg-131 mRNA downstream 4108 36584233 ~ 36584304 (+) True trnap-agg-131
trnap-agg-132 mRNA downstream 5510 36585635 ~ 36585706 (+) True trnap-agg-132
trnap-agg-133 mRNA downstream 6912 36587037 ~ 36587108 (+) True trnap-agg-133
TU909468 other upstream 263249 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1207906 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2023432 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2458314 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3992666 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 454293 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 987120 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1490091 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2207936 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2352827 38932952 ~ 38933868 (+) True G801851