RNA id: trnap-agg-132


Basic Information

Item Value
RNA id trnap-agg-132
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-132
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36585635 ~ 36585706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909661 lncRNA upstream 320 36563392 ~ 36585315 (+) True G799221
TU909659 lncRNA upstream 47136 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 49153 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 61971 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 90583 36476096 ~ 36495052 (+) True G799214
TU909664 lncRNA downstream 25161 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 45585 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 54124 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 59604 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 59978 36645684 ~ 36646031 (+) True G799250
trnap-agg-131 mRNA upstream 1331 36584233 ~ 36584304 (+) True trnap-agg-131
trnap-agg-130 mRNA upstream 2724 36582840 ~ 36582911 (+) True trnap-agg-130
trnap-agg-129 mRNA upstream 4117 36581447 ~ 36581518 (+) True trnap-agg-129
trnap-agg-128 mRNA upstream 5510 36580054 ~ 36580125 (+) True trnap-agg-128
trnap-agg-127 mRNA upstream 6903 36578661 ~ 36578732 (+) True trnap-agg-127
trnap-agg-133 mRNA downstream 1331 36587037 ~ 36587108 (+) True trnap-agg-133
trnap-agg-134 mRNA downstream 2733 36588439 ~ 36588510 (+) True trnap-agg-134
trnap-agg-135 mRNA downstream 4135 36589841 ~ 36589912 (+) True trnap-agg-135
trnap-agg-136 mRNA downstream 5537 36591243 ~ 36591314 (+) True trnap-agg-136
trnap-agg-137 mRNA downstream 6939 36592645 ~ 36592716 (+) True trnap-agg-137
TU909468 other upstream 268830 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1213487 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2029013 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2463895 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3998247 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 448712 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 981539 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1484510 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2202355 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2347246 38932952 ~ 38933868 (+) True G801851