RNA id: trnap-agg-134


Basic Information

Item Value
RNA id trnap-agg-134
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-134
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36588439 ~ 36588510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909661 lncRNA upstream 3124 36563392 ~ 36585315 (+) True G799221
TU909659 lncRNA upstream 49940 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 51957 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 64775 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 93387 36476096 ~ 36495052 (+) True G799214
TU909664 lncRNA downstream 22357 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 42781 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 51320 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 56800 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 57174 36645684 ~ 36646031 (+) True G799250
trnap-agg-133 mRNA upstream 1331 36587037 ~ 36587108 (+) True trnap-agg-133
trnap-agg-132 mRNA upstream 2733 36585635 ~ 36585706 (+) True trnap-agg-132
trnap-agg-131 mRNA upstream 4135 36584233 ~ 36584304 (+) True trnap-agg-131
trnap-agg-130 mRNA upstream 5528 36582840 ~ 36582911 (+) True trnap-agg-130
trnap-agg-129 mRNA upstream 6921 36581447 ~ 36581518 (+) True trnap-agg-129
trnap-agg-135 mRNA downstream 1331 36589841 ~ 36589912 (+) True trnap-agg-135
trnap-agg-136 mRNA downstream 2733 36591243 ~ 36591314 (+) True trnap-agg-136
trnap-agg-137 mRNA downstream 4135 36592645 ~ 36592716 (+) True trnap-agg-137
trnap-agg-138 mRNA downstream 5537 36594047 ~ 36594118 (+) True trnap-agg-138
trnap-agg-139 mRNA downstream 6939 36595449 ~ 36595520 (+) True trnap-agg-139
TU909468 other upstream 271634 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1216291 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2031817 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2466699 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4001051 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 445908 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 978735 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1481706 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2199551 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2344442 38932952 ~ 38933868 (+) True G801851