RNA id: trnap-agg-138


Basic Information

Item Value
RNA id trnap-agg-138
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-138
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36594047 ~ 36594118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909661 lncRNA upstream 8732 36563392 ~ 36585315 (+) True G799221
TU909659 lncRNA upstream 55548 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 57565 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 70383 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 98995 36476096 ~ 36495052 (+) True G799214
TU909664 lncRNA downstream 16749 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 37173 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 45712 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 51192 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 51566 36645684 ~ 36646031 (+) True G799250
trnap-agg-137 mRNA upstream 1331 36592645 ~ 36592716 (+) True trnap-agg-137
trnap-agg-136 mRNA upstream 2733 36591243 ~ 36591314 (+) True trnap-agg-136
trnap-agg-135 mRNA upstream 4135 36589841 ~ 36589912 (+) True trnap-agg-135
trnap-agg-134 mRNA upstream 5537 36588439 ~ 36588510 (+) True trnap-agg-134
trnap-agg-133 mRNA upstream 6939 36587037 ~ 36587108 (+) True trnap-agg-133
trnap-agg-139 mRNA downstream 1331 36595449 ~ 36595520 (+) True trnap-agg-139
trnap-agg-140 mRNA downstream 2733 36596851 ~ 36596922 (+) True trnap-agg-140
trnap-agg-141 mRNA downstream 4135 36598253 ~ 36598324 (+) True trnap-agg-141
trnap-agg-142 mRNA downstream 5535 36599653 ~ 36599724 (+) True trnap-agg-142
trnap-agg-143 mRNA downstream 6937 36601055 ~ 36601126 (+) True trnap-agg-143
TU909468 other upstream 277242 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1221899 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2037425 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2472307 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4006659 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 440300 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 973127 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1476098 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2193943 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2338834 38932952 ~ 38933868 (+) True G801851