RNA id: trnap-agg-147


Basic Information

Item Value
RNA id trnap-agg-147
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-147
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36608065 ~ 36608136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909661 lncRNA upstream 22750 36563392 ~ 36585315 (+) True G799221
TU909659 lncRNA upstream 69566 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 71583 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 84401 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 113013 36476096 ~ 36495052 (+) True G799214
TU909664 lncRNA downstream 2731 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 23155 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 31694 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 37174 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 37548 36645684 ~ 36646031 (+) True G799250
trnap-agg-146 mRNA upstream 2733 36605261 ~ 36605332 (+) True trnap-agg-146
trnap-agg-145 mRNA upstream 4135 36603859 ~ 36603930 (+) True trnap-agg-145
trnap-agg-144 mRNA upstream 5537 36602457 ~ 36602528 (+) True trnap-agg-144
trnap-agg-143 mRNA upstream 6939 36601055 ~ 36601126 (+) True trnap-agg-143
trnap-agg-142 mRNA upstream 8341 36599653 ~ 36599724 (+) True trnap-agg-142
trnap-agg-148 mRNA downstream 1331 36609467 ~ 36609538 (+) True trnap-agg-148
trnap-agg-149 mRNA downstream 2733 36610869 ~ 36610940 (+) False trnap-agg-149
trnap-agg-150 mRNA downstream 4136 36612272 ~ 36612343 (+) True trnap-agg-150
XR_002474793.2 mRNA downstream 326925 36935061 ~ 36937214 (+) True LOC110531983
XM_021615539.2 mRNA downstream 329712 36937848 ~ 36942240 (+) False adtrp1
TU909468 other upstream 291260 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1235917 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2051443 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2486325 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4020677 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 426282 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 959109 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1462080 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2179925 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2324816 38932952 ~ 38933868 (+) True G801851