RNA id: trnap-agg-149


Basic Information

Item Value
RNA id trnap-agg-149
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-149
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36610867 ~ 36622475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909661 lncRNA upstream 25554 36563392 ~ 36585315 (+) True G799221
TU909659 lncRNA upstream 72370 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 74387 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 87205 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 115817 36476096 ~ 36495052 (+) True G799214
TU909681 lncRNA downstream 20351 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 28890 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 34370 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 34744 36645684 ~ 36646031 (+) True G799250
TU909701 lncRNA downstream 46908 36657848 ~ 36658297 (+) True G799258
trnap-agg-148 mRNA upstream 1331 36609467 ~ 36609538 (+) True trnap-agg-148
trnap-agg-147 mRNA upstream 2733 36608065 ~ 36608136 (+) True trnap-agg-147
trnap-agg-146 mRNA upstream 5537 36605261 ~ 36605332 (+) True trnap-agg-146
trnap-agg-145 mRNA upstream 6939 36603859 ~ 36603930 (+) True trnap-agg-145
trnap-agg-144 mRNA upstream 8341 36602457 ~ 36602528 (+) True trnap-agg-144
trnap-agg-150 mRNA downstream 1332 36612272 ~ 36612343 (+) True trnap-agg-150
XR_002474793.2 mRNA downstream 324121 36935061 ~ 36937214 (+) True LOC110531983
XM_021615539.2 mRNA downstream 326908 36937848 ~ 36942240 (+) False adtrp1
XM_021615538.2 mRNA downstream 327326 36938266 ~ 36942240 (+) True adtrp1
XM_021614398.2 mRNA downstream 330569 36941509 ~ 36953375 (+) True LOC110531160
TU909468 other upstream 294064 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1238721 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2054247 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2489129 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4023481 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 423478 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 956305 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1459276 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2177121 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2322012 38932952 ~ 38933868 (+) True G801851