RNA id: XM_021614398.2


Basic Information

Item Value
RNA id XM_021614398.2
length 2204
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110531160
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36941509 ~ 36953375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTGCCACAGAGGGGACCAGAGAGGCCTATATGATGATATCAcacgaggacagacagacaggacacagcaCCCCCAGCACTGATTACCTCAACCAGAAGAGACTGGTGGATCTCTTAGGACATTGTTTTACAACACCCCTCCTGTCTCCTTTTAAACCCTCCAACCCTCCATGCGTACCCCCAGTCAGGACACCCCAGTCGAAGTACACGTTGGTGGGGGAGGTGATACGTCACGTCATCCCTGGAGCCACACAATGCTCCATAGGGTGTGGAGGTCAGAACTGCAAGTATGAGAACCCTGACCGCTGGAGCAAGGACAAGCAAGCCATCAAAGGCCTTTACTCCTCCTGGGTCACGGAAAACCTACTTGCCATGGCCAGACCATCTACTGTATTAATAGAAAAGTACAACATTATTGACCAATTTAAAAGatgtggcctGAAGACAGTGATAAACCTGCAGAGACCAGGGGAACACGCCAGCTGTGGTCCCAATGCACTGGAATCAGAGAGTGGATTCTCCTACCAACCTGAGGTCTTCATGGAGAACAACATATATTTCTACAACTTTGGTTGGAATGACTATGGGGTGGCCTCCCTCGCATCCATCCTGGACATGGTGAAGGTCATGTCCTTTGCGATGCAGGAGGGGAAGATGGCTGTCCACTGTCATGCTGGTCTGGGAAGAACAGGTGTGTTGTTAGCGTGTTACCTGGTCTTCGCCACCAGGATGACCGCTGACCAGGCCATCGTGTTTGTACGTTCCAAACGACCCAACTCCATCCAGACCAGAGGTCAGCTGTATTGCGTGCGGGAGTTTGCCCAGTTCCTGGTCCCTGTCAGGAGTATTTTCTCCTGCGCTGAGCCCAGGACTAACCCCATCACCCTGTCCCAGTTCCTGACCCGCCAGGGACACATGCTGCATGGCTATGAGCGCCGGGAGCTCAGGCACCTGCCTAAGATCATCCAGGTGATCTGCAAGCTGCTGCTGGACATCGCTGAGAACCGGCAGGTCATCGAGGAGGACATGCTGGACATCCATGACATGACGGCCGAGGAGGAGATGGAGTTTGAGCGTTATCGCGACTTTGGATTCACCAAGGGAAGCTTCGGGGGAGGCGGCCTCGGAGGGCAGCCCCGCTTACCGGGACCCCCAACCAAACCCCGGCATGCCAACGAACCGCCCCTGTTCTACCACCGCAAGAGCCTGAGCTACAGCGAGTCGGACCTGCGAAGGCTGGGCTCTGAGCTGAACCTGCCGACCCTACCTCTCTCCAACTCGCTGTCCGCTTGCAACATGTCTgtggcctgttctccctccctAAACTCCCTGCCTAGGACCCCGGCCACAGGCAGCTCCATGGGGCCCAGGCAAATAACCACCACCTACGGCTCCCAAGATGGATCCCTCTGGGAGCAGAAGAGCCTCGCGGAGGGATCACCGCTCCTAAAGAAGACACAGAAAGCCTGCCAGCGCAGCGAGTCCGAGTGCAACCCCGAGAAGAAAGGGTATAGCAGCATGTTGTTTAGGtggaaggaggagcagagggacAAGTTAGCGAAcaatggtgatgtgtctcagatAGAGGAGTCAGAGGTGCCCttcatcaccatccagacagagtTGTCCAAGGAGGCCAGGCGGCTGCTGGTGGCCCAGGCCCTGGCTGTGGATCTGgagcaggatggagaggaggagcacAGGGAGAGACTACAAGCCTGGCAGTCAGAGTTGAACATGGGAGGGGCATGGGAGAGGCTGTGTACATTGGAGAAGGACCCGTTTGTGCTGTCTGGGCTGATGTGGACCTGGCTGGAGCAGCTGAAGGAGCCAGTCATCTCCATCAAGGATATACAGAATCTGGACCATAACAACATTGACCCTGCAAACCCAGAGGCTGTCTTCAAACCACTGGACCAGGCTCCCAGGGAGATGTTAGTGTGCATTCTGGACTGTATGGCTCATGTTCTCACAATTCCAGAGGAGGTGGAGGCTGCTTTCCTGGAGCGCACCATCAAGGCTTTCACAAAGATGGGAAAAGGCTCAGCGGTGTATCCGGACATGACAGAGATCCTTAGGCTGGTCCTACACGACATGAGGTTTATAGCCATAGAGGAGGATGAGGTACCAGATATGGCACCCATTCCTACTGTACTGATCCCATAAACCttctgtattctgttccagacCATCCCTTGCTA

Function

GO: NA

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909912 lncRNA upstream 107746 36827899 ~ 36833763 (+) True G799457
TU909796 lncRNA upstream 120908 36820050 ~ 36820601 (+) True G799347
TU909791 lncRNA upstream 136695 36804533 ~ 36804814 (+) True G799342
TU909790 lncRNA upstream 137022 36804262 ~ 36804487 (+) True G799341
TU909780 lncRNA upstream 151409 36789804 ~ 36790100 (+) True G799331
TU910006 lncRNA downstream 26146 36979521 ~ 36979856 (+) True G799536
TU910043 lncRNA downstream 68847 37022222 ~ 37022581 (+) True G799573
TU910061 lncRNA downstream 72252 37025627 ~ 37025884 (+) True G799590
TU910053 lncRNA downstream 93343 37046718 ~ 37048303 (+) True G799582
TU910097 lncRNA downstream 141381 37094756 ~ 37094961 (+) True G799626
XR_002474793.2 mRNA upstream 4295 36935061 ~ 36937214 (+) True LOC110531983
trnap-agg-150 mRNA upstream 329166 36612272 ~ 36612343 (+) True trnap-agg-150
trnap-agg-149 mRNA upstream 330569 36610869 ~ 36610940 (+) False trnap-agg-149
trnap-agg-148 mRNA upstream 331971 36609467 ~ 36609538 (+) True trnap-agg-148
trnap-agg-147 mRNA upstream 333373 36608065 ~ 36608136 (+) True trnap-agg-147
XM_021615541.2 mRNA downstream 7940 36961315 ~ 36970867 (+) True LOC110531987
XR_005053235.1 mRNA downstream 77385 37030760 ~ 37063684 (+) True LOC118966039
XM_021615545.2 mRNA downstream 149264 37102639 ~ 37166005 (+) True nup210
XM_021615553.2 mRNA downstream 226515 37179890 ~ 37357280 (+) False iqsec1a
XM_021615546.2 mRNA downstream 226515 37179890 ~ 37360016 (+) False iqsec1a
TU909468 other upstream 624704 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1569361 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2384887 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2819769 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4354121 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 81043 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 613870 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1116841 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1834686 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1979577 38932952 ~ 38933868 (+) True G801851

Expression Profile