RNA id: XM_036987909.1


Basic Information

Item Value
RNA id XM_036987909.1
length 2111
RNA type mRNA
GC content 0.48
exon number 12
gene id fbxw12
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36953521 ~ 36963920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGTCTAGCTGCTTGATGGTTAGAACACGTGTTATATTACAATGCTACTAGCTATTTGTTGTGTGTGACTCTACTGAACAGCCCAAATCCAGGTTGGGATAGGATACAATCCTAGATTACGTTCTAGTTGCTCTCTGAATATGCAACAATCTGCTTCCAGTGGACCAGCCATGAACCTGCACCTACAGTAGGCCATCCCTGTGTCCCCAAAGACATCCAAGGCATCCATCAATGCTGTGAAACCTATTGCCTAACCAGAAGATGACTTAATTCGAGCATCAAGTGTCTGTAAGGAATGGCAAGAAGCAGCAGAAACACCTTGGTTGTGGCGAGAAATGTGTCTGCAGCGTTGGGGTTTCTGTAACATTGCGGTGCTGGGCTCTGAACATGGGAAGCAGACTTGGAAGAGCTACTTCCTGCGTCGCTCTCACCTGGAGCTGAAGATGACCAAGGGCAGGTCCGGTGGGGACTACACCTGTAAAAGCTTGAGGGGACACACAGGCAGGGTGGTTGGGTGTGTGTACCTGTCAGGGAACTCTCCCCAGCTCCCTGACTTCTGGAGCTCTACCCCTACTGTCTGCAGTTCATCCTCAGATGGTACAGTCCGTGCCTGGGATGTCCAGCAGGGGGTACAGCTGTGGTGCAGCCCTGTTCAGAGTCCTCTGACTGGGATGGTAGCTGACGGTGGGCATGGTGGGGTCATCACGTCAGATTCCACAGGGCTGCTCAAAGCCTGGGATGGTCAGAGTGGACAGGAGATGTTCTTCTACTCCTCAGCATCCCCACAGTGCACCTTACTGCCCTACAGTTTGGAAGGCAGCTCTTTTCTCTCAGTGGGGACCAGTCAAGGCTCTGTCCATACTCTGACTAGCCCCTCACTGTCAAAGCTGTCCACTCTGGTGGTGTGTGACACATTCAAAGTAAACCTACTCCTGGCATCGCCAGACAAGAAATGGATCCTAGCTGGAACTACAGAGAATATGGATATGAGTCCAAAGGTGTTGTCCAGTCAGAGTGTGACGTGTCCCTCAGAGGAGGAGGATCCTCTGTGCCAGTGTCTGCCTGTCTCAGGCTGCAGTGCTGCTGCCTTCCTGCCCTCCCAGCCAGCCAGACTGGCCACGGTCCACTGCAAGGACAACTCGCACTCAAACACGCATCACAACAAGGTCCTCTCTGTGTTCGACGTCATCATAAAAAAGACCAGATTCAAGACAGAGATCCAGGTTGAGCAGGTGGAGAAATTCGAGTTGGTATTTGAGGGCAGGGCTTCGGACATCCTTCTGGAAGGCAAGGGAAGCAGCACTCTGGTTGTAGCTGCTCACAGAGAGCTGAAGGTCTACACTGTGAAAGGAGAACTCCTCTGTAGCTTCAAGGACCATACTGAACCTATCTGCTCTATTTGTGTGGATAGTTTCCGTGTAGTCACTGCTTCTCGGGACCTGTCCTTAAGAGTGCTGACGTGGAAAACTGACAGAGACAAAGGGCTCACACTGGAAAGTCGATACCACTTATTGGGAGGCTCTCACTCCATGTCCAGAGGGTTCAGTtatgtggtttgtgactactcaACCATTGTGGCTTCAGTGGAAGCAGTGGATGGGAAGGATGTCCTGAAGGCCTACTCTTTCAACTCCTGAGCAACACTGTCCTCTAGGAGGACTTCGCAGGTACTACAGCAGTTAGCATCAGTCGCTAACAATTAATTGTGCATGTTTCTGAGTAGTTTAATCACTGATGTTGTGCCTTGCCTTTACAAACCCTCTGCTTATGGAATATACATTGTAATCAAGAGTTATCGCGGATGTGTTTATATGCTATGCAAAGCATGCACATACATGCAAGTATGAAGGGGAAAAACATTGCAGTTTGCTGTGCCATGATACTTTATTTTTGTGCAATAACACATTTCTGTACAGGAATGAATGGTTATAATCACTTAGCTGGCTTTATGTGGAGCTTAGATATTTAAATCCCTGTGTTGGATGTTACATGTTCAATATAACCTAAATCTTTAGGGCATATACTGTAACAAATACTGCCCCTTGATCTTCTTATCAAAACCAAACTGACAATTTATTTTTAACTCTCAAATAAACTGCATTTTCTTGGG

Function

GO: NA

KEGG:

id description
K10267 FBXW12S; F-box and WD-40 domain protein 12/13/14/15/16/17/19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910538 lncRNA downstream 61972 36891045 ~ 36891549 (-) True G800024
TU910501 lncRNA downstream 121942 36827896 ~ 36831579 (-) True LOC110531982
TU909908 lncRNA downstream 127252 36826050 ~ 36826269 (-) True G799453
TU909896 lncRNA downstream 139955 36813232 ~ 36813566 (-) True G799441
TU909895 lncRNA downstream 140509 36812736 ~ 36813012 (-) True G799440
TU910607 lncRNA upstream 60087 37024007 ~ 37024771 (-) True G800088
TU910682 lncRNA upstream 171744 37135664 ~ 37220995 (-) True G800155
TU910815 lncRNA upstream 331700 37295620 ~ 37364847 (-) True G800274
TU910817 lncRNA upstream 393013 37356933 ~ 37360724 (-) True G800276
TU910816 lncRNA upstream 396937 37360857 ~ 37361967 (-) True G800275
XM_021615537.2 mRNA downstream 45821 36827882 ~ 36907700 (-) False LOC110531982
XM_036987905.1 mRNA downstream 45821 36827882 ~ 36907700 (-) False LOC110531982
XM_036987906.1 mRNA downstream 45821 36827882 ~ 36907700 (-) False LOC110531982
XM_036987907.1 mRNA downstream 45821 36827882 ~ 36907700 (-) False LOC110531982
XM_036987908.1 mRNA downstream 68803 36827882 ~ 36884718 (-) False LOC110531982
XM_021615544.2 mRNA upstream 70379 37034299 ~ 37081699 (-) False LOC110531988
XM_021615543.2 mRNA upstream 70379 37034299 ~ 37081769 (-) False LOC110531988
XM_036987913.1 mRNA upstream 70379 37034299 ~ 37081769 (-) True LOC110531988
XM_021615554.2 mRNA upstream 401757 37365677 ~ 37372883 (-) True LOC110531992
XM_021615556.2 mRNA upstream 409300 37373220 ~ 37377287 (-) False cnbpa
TU910500 other downstream 45873 36827896 ~ 36907648 (-) False LOC110531982
TU909355 other downstream 802884 36150338 ~ 36150637 (-) True G798993
TU909208 other downstream 974406 35977422 ~ 35979115 (-) True LOC110531979
TU908458 other downstream 1432189 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 1566389 35385853 ~ 35387132 (-) False LOC110531966
TU910862 other upstream 380475 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 1877289 38841209 ~ 38841512 (-) True LOC110532015
TU912768 other upstream 2002536 38966456 ~ 38996032 (-) True G802100
TU912807 other upstream 2086610 39050530 ~ 39061381 (-) True G802138
TU912821 other upstream 2110561 39074481 ~ 39074720 (-) True G802149

Expression Profile