RNA id: XM_021615541.2


Basic Information

Item Value
RNA id XM_021615541.2
length 2675
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110531987
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36961315 ~ 36970867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCCTGCTGGTAGCAAAAAACACAGTGAGAAGGAGATAATCGCACTACAGCACTTGCTCATCCTCCGTTTTACCTGTGACACCCTCGCAATGATAAAACGGCACAGTAAAGGGGCCACGTAGGGGAGTTTACGGATATCATTAGTCTACAGCTAAGACTAGCCTAGTATATAACATAATTGGCCTATCTGTTGGGGATATTCGTTTGTACCGACTTGAAGTAATTTTGGATAATTTGGACAGTGACTATCGGGAGAATATATATTCATCGCTTTCTCTTACACACTGCATGAAGCTGAGAGTGGAAGCACCATGAGTCGAAAAACTAGACGCTGGATTTTTCGGGTTTTGCTTTGCCTTGGGATTGTCTATTTGAAAATCGGTGGCTTTTCATCGGTGGTCGCGCTAGGTGCGAGTATAATCTGTAACAAGATTCCCGGTTTGGCTCCCCGACAGCGGATAATCTGTCAGAGTCGCCCGGATGCCATTATCGTCATCGGAGAGGGAGCACAAATGGGGATAAACGAGTGTCAGTTTCAGTTCAAAAATGGGCGCTGGAACTGCTCTGCGCTTGGAGAACGGACGGTCTTCGGAAAAGAGTTGAAAGTGGGCAGTAAAGAGGCTGCGTTCACCTACGCCATCATAGCGGCCGGCGTTGCCCACGCCATTACTGCAGCCTGTACTCAGGGGAACCTGAGTGACTGCAGCTGTGACACGGAGAAGCAGGGTTTCTACAGTAAAGGCCAGGGCTGGAAGTGGGGCGGCTGTTCAGCAGACATCAGCTACGGCCTGGGCTTCTCCAAGGTGTTCGTGGACGCCAGAGAGGTCAAACAGAATGCCAGGTCTCTCATGAACCTGCACAACAACGAAGTGGGACGCAAGATCCTGGAGAAGAACATGCATTTGGAATGCAAGTGTCATGGTGTTTCGGGCTCCTGCACCACCAAAACCTGCTGGACGACACTTCCCAAGTTCCGCGAGCTCGGCTACATTCTCAAAGAGAAGTACGCCCATGCTGTGCACGTGGAACCGGTCAAAGCCAGCCGCAACAAGCGGCCCAAATTCCTCAAGATCAAGAAGCTCTACTCCTACCGGAAACCCATGGACACAGACCTGGTGTACATGGAGAAGTCCCCTAATTACTGCGAAGCGGACCCGATGACGGGCAGTGTTGGAACGCAAGGCCGGCTGTGTAATAAGACTGTTATGCAGCAGATCAGCGGCTGTGACCTGATGTGCTGCGGACGGGGGTACAACACACACCAGTACTCCCGCGTGTGGCAGTGCAACTGCAAGTTCTTGTGGTGCTGCTACGTCAAGTGCAACACCTGCAGCGAGAGGACAGAGGTGTACACCTGCAAATGACAATATTTATTGGACCGTCagatgtgtgtctttgtgtgtctgtgcatagTGGATTTTTTTAAACTAATGGATAGAGGCTGTCTCTGCAGAAATAGACATTGAGGAACTAAGAAGATGGAACAACAGCGATTTTGTTTGCACACAAcgctcctcctcccctctcaatATACATGTACTGGGATGCTTGCATTCGCTGGTGACATAAGGAGCTGTGTGCGATGGTGCAAAACATCAACATAAAGGGAAACACTGTGTCTTGGAAGCCAGGATGGAACAGCCTCAGGTCATGAACTATAAGACACTgagctgcctacctgcctgcctacctggaTTGATGTGTACTAGCTACTTACTGTTGACTGTAGAGCTAATGGATTCTCCAACGCTCACCATGAATCAATGCTGGATATAATGCTGGACTGTGCTACTACTGTAGTTCTCTGTACCTGTAGCTCAATAGGACACGCTATgcacaaatgaaatgaaagagCCATCTGGAATATTTAACATACTGTATTTAGAGACACAATAATAATATTAATTTATTTTATAAAGAAACTACTGATTTTGTCCGTTATGGAGCAAGTCTTAATTGTGTAGATGATGGGTGGTTCCCCCAATTAGAGTTTGTTATTGGTTTGTTTGTTGCAATCAAACATAGAACATACAGTCATACACTGGAATGAGTCAGCCTGGAATTTTCCTCTGTGGAATATTATGTCCCTCATATTGTTCCAGGTTAGGCTGGTAATAGACTACTGACATTTACTTTCTCATGAGTTTGGGCTAATCTGAAatcctattcccttcatagagtctctgaccaaaagtagtgcactatatggggactATGGTGCCATTTCGGATGTGGCTTTAGTCTTCCTTCTGTTTGCTGCTAGTCTGGAGAGTCACTCACTGTGGTCTAAGGGCATCAACACTACTGTCTGTGTTAAATGACAATGCTCACCTCAAAGCTGACTAAATTTAACAAGACATATTCAACCAGACAGACACTCTTTTTGGTAAATACTGGTAAAGAGAGTATATTTTGTTAAAGCCTATTTTTATATGAATGTCTTATTTATACTATTTCTTCTGGCATAattcaatttcaagtctcttCCCTCTTTATCCCTCTGTAAAATCCTTGTGTTTTTCGCCACTGGTGTCACTTCACTGCCATTGTTGTCTACTGCATGTGATTGGAACCCTGAGTTTATCCCTGTGAGTATATGGCTGTGTTCAAACTGCTCTGTTTACTGCATTTCATGACTGGTATGGTTGGAATACAGGAACAGGATATGACTAA

Function

GO: NA

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909912 lncRNA upstream 127552 36827899 ~ 36833763 (+) True G799457
TU909796 lncRNA upstream 140714 36820050 ~ 36820601 (+) True G799347
TU909791 lncRNA upstream 156501 36804533 ~ 36804814 (+) True G799342
TU909790 lncRNA upstream 156828 36804262 ~ 36804487 (+) True G799341
TU909780 lncRNA upstream 171215 36789804 ~ 36790100 (+) True G799331
TU910006 lncRNA downstream 8654 36979521 ~ 36979856 (+) True G799536
TU910043 lncRNA downstream 51355 37022222 ~ 37022581 (+) True G799573
TU910061 lncRNA downstream 54760 37025627 ~ 37025884 (+) True G799590
TU910053 lncRNA downstream 75851 37046718 ~ 37048303 (+) True G799582
TU910097 lncRNA downstream 123889 37094756 ~ 37094961 (+) True G799626
XM_021614398.2 mRNA upstream 7940 36941509 ~ 36953375 (+) True LOC110531160
XM_021615539.2 mRNA upstream 19075 36937848 ~ 36942240 (+) False adtrp1
XM_021615538.2 mRNA upstream 19075 36938266 ~ 36942240 (+) True adtrp1
XR_002474793.2 mRNA upstream 24101 36935061 ~ 36937214 (+) True LOC110531983
trnap-agg-150 mRNA upstream 348972 36612272 ~ 36612343 (+) True trnap-agg-150
XR_005053235.1 mRNA downstream 59893 37030760 ~ 37063684 (+) True LOC118966039
XM_021615545.2 mRNA downstream 131772 37102639 ~ 37166005 (+) True nup210
XM_021615553.2 mRNA downstream 209023 37179890 ~ 37357280 (+) False iqsec1a
XM_021615546.2 mRNA downstream 209023 37179890 ~ 37360016 (+) False iqsec1a
XM_021615547.2 mRNA downstream 307945 37278812 ~ 37360016 (+) False iqsec1a
TU909468 other upstream 644510 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1589167 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2404693 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2839575 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4373927 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 63551 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 596378 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1099349 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1817194 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1962085 38932952 ~ 38933868 (+) True G801851

Expression Profile