RNA id: XM_021615548.2


Basic Information

Item Value
RNA id XM_021615548.2
length 7283
RNA type mRNA
GC content 0.50
exon number 14
gene id iqsec1a
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37179890 ~ 37360016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggcagccCTAATATATACATAACCGTCACTTTAAATTTCACTGCAGGACCCTAGTTTTTGCAGTAGTTTATCATTCTGTGTCTGTATTCAGCTAATTCCTCCACGTCCCAGGTGGCAGCCTGGCTGTCTGCTATAGAGCCACGTCCACCAACATGTTTACAGAAATCATACTTCGCTGTTTGGTTGAAAGGCAGTTGAATGTCTAAAACGAATACAAAGGCCTCACAAAGCACAATGTGTCCCTTTCAGAGGAGTTTTAAACTGATTGAGCTGCATTGAAGCTGGAGTGGCTTTGGCCGTTTCCTCGATGCCTTTCATGTGTTAACCCCTGTGACTCCTTATCTGTGGTATTCATACGTTAGTAGTGCTAGTGCCCATCTATAACTCAGAAGGCCCCTACATTTTAATCGGGCAGTTGGAGGGCCTATTTAACCTTTACTGTGGGTGTAAACATGGCGTCAGTATATATTTGGGATGCAGAAGGGTGTGTTGTGAATATTCAATACAGTTACTGTGGTTAGACTTTAGAAGTGACAACGTCCCACTATAAGGCTGGAAATACACCGTGGTCATGGTCAGGGGATTGACACTGTGGTCAGCTGTGACTCTGACATCTGTTTGTAGGTCACATGTTATAGGGAATCAACCTTGTTTGGTACTTTTGAGTGTGGTGTAAGATGAGTCAAATAGTTTGAATATCAATTTCTATTAACAATTGTACAGTATCACTATTTCTCATTTAGCATATAATGGAAATTGGAAAAGGCATTGCTAAACTATGACATCATTGCTAAAAGCCACACTGGCTGTAGTTTGTATTGCAACTTGAAGATGAATTTCCTTATTTGCAGTGCATATACAGAAACAAATCCTCCTGGCTCTAACTCGGTAGTTGGCAGTCTCCTGTATGAGGAGGGCAGTGGTTGTATGTACCTAAGAAAAAAGGGGTGTGTCAGGTGTACACTAACAGGTGAAGTCACTATTCACACCACAACACGTCCCGTGTTAAAGTGAAAGCTCCCATGACAAGAGTTAAGACAGGGAGTTATATGGTGAAGCCTCCCATACCCCCTTCCACGTTGACTCATTGAATCGATTTAAGTCGGTTCCAAATTATTGTTAACATTTGATATATTTACCTTGTCACCGTGCGCTCCAACTGGACTTTGGAATATATATTGGACTCACTTTAGTAGAAGTGAGGCTCCTATATGCCAAACATGATGTAACTGTCATTGGTCACTGGTTGAACTTTGAACTGCCTGGTGCAGACTGAGTTTCCTGGAGGAGCTGCTGTGAGTGTGTACTCAAATCTTCAACATGGTGGACAAGGCATGGAGGAAGAGTTGGCAGTTCATCGAGAACAGGATGTCTCTGCGTGTGAAGAAGCAGTCTTCTCCTACTGTTGAACGTAAGAGTGATGTGGAGGGGGATGCGCGGCCCAGTGAGAGTGACGGTGGAGCAAGCTACAGGGGCCCAGTGATAAGCCCAGACCGCTTCGAGGGCCCCCTCTACGGCCACGGGGTACAGCCGGGCCCCCAGCGCCCCCCCCGCAGGCCCAAGCTCCAGCACTCGCAGTCCATTCTTCGCAAGCAGGCCGAGGAGGAGGCCATCAAGCGCTCCCGCTCGCTCTCCGAGGGCTATGAGCTCTCCGCTGACCTCCAGGACAAACAGGTGGAGATGCTGGAGCGTAAATATGGCGGACGCTTCATAACCCGGCATGCGGCCCGCACCATCCAGACAGCCTTCCGCCAGTACCAGATGAACAAAAACTTTGAGCGTCTCAGGAGTTCTATGTCTGAGAACCGCATGTCCCGACGCATCGTTCTGTCCAACATGAGGATGCAGTTCTCCTTCGAGGGCCCTGAGAAAGTCCACAGCTCCTACTTTGAGGGGAAACAGGTGTCCCTGACAGACGACGGCACCCCCCTGGCCTTGGTACAGTCTGAGTGCGGGGACATGGAGGTCCACCACCAGGCCAACATGGCGTCTCACCCTGCTTCCCAGAACGACCTGACGGACGCCATCACGGAGTTGGAGGACGCCTTCTCCAGGCAGGTGAAGTCTCTGGCCGAGTCCATTGATGATGCCTTGAACTGCCGCAGCCTGCAGGGCGACGAGGGTCTTGACCCTGAGGCCATGGGCTGCccggaggtagagagggaggtggcCTATCAGGTGAAGCCTCACCGCGGGGTGGCGGGGCGCATGCGAGAGGACATGATGGCGTCCTACAGCGATGTGACTCTGTTTATCGACGAGGAGGAGCTGTCTCCCTCTATGGGGCTATCGCGGGGGTCAGGTGACCAGCCCTCCAGCATTGAGTCAGACCTACGCCTGCGCTCAGCCAACTCCTCCCAGGAGTACTGGCCCCTGGACACCAAAGATGAGGGGCGTGACACAGACACCAGCTGCCGCAGCACCCCTTCCCTGGAGTGCCAGGAGCAGCGGCTCAGGGTGGACCACCTCCCCCTGCTGACCATCGAGCCGCCCAGCGACAGCTCCGCCGAACACAGTGACCGCTCTGACCGTAGCTCCGTCAAACGACCGCCCGTCTACGAGCCTCACGGGGGCAGCCACATCGTGGCGTCCTCCAAGGCTAGCCCCAAACACATCTCTCATGGCCCACCCCCGCGGGCGCCCTCCAGGGATGACGAGGCGCCCCTCCGCCACCGCCACCGGGCACTGGAAAGCCACCTGGCCATCAACGGCTCTGCCAATCGGCAGAGCAAGTCTGAGTCTGACTTCTCGGACGGGGATAACGACAGCATCAACAGCACATCGAACTCCAACGACACCATCAATTGCAGCTCTGAGTCGTCCAGGGACAGCCTGAGGGAGCAGACACTCTGCAAGCAGACATACCACAAAGAGACACGTAACAGCTGGGACTCGCCCGTCTTCAGCAACGATGTGATCCGCAAGAGGCACTACCGCATCGGCCTGAACCTCTTCAACAAGAAGCCAGAGAAAGGCGTACAGTACTTGACTGAGAGAGGGTTCGTCCCGGACACACCTGTGGGTGTGGCTCACTTCCTGCTTCAGAGGAAGGGCCTGAGCAGGCAGATGATTGGAGAGTTCCTGGGCAACCGTCAGAAACAGTTCAACAGAGACGTCCTGGACTGTGTGGTGGATGAGATGGATTTCTCGTCAATGGAGCTGGACGAGGCACTGAGAAAGTTCCAGAACCACATTCGGGTCCAGGGAGAGGCCCAGAAGGTGGAGCGCCTCATCGAAGCCTACAGCCAACGCTACTGTATCTGTAACCCTACGGTAGTGCGACAGTTCCGGAACCCTGACACGATCTTCATCCTGGCCTTCGCCATCATCCTCCTCAACACAGACATGTACAGCCCCAACGTCAAGCCGGAGAGGAAGATGAAGCTGGAGGACTTCGTCAAGAACCTCcgagGGGTGGATGATGGGGAGGACATCCCCAGGGAGACTCTGGTAGGAATTTATGAAAGGATCAGGAAGAGGGAGCTGAAGACAAACGAGGACCACGTGTCTCAGGTTCAGAAGGTGGAGAAACTCATAGTGGGGAAGAAACCGATTGGATCTCTCCACCATGGAATAGGATGTGTGCTGTCCCTGCCCCATCGCAGGCTAGTGTGCTACTGTCGGTTGTTTGAAGTGCCAGACCCCAACAAGCTCCAGAAGTTAGGCCTGCACCAGCGGGAGATCTTCCTGTTTAATGACCTTCTGGTGGTGACAAAGATTTTCCAGAAGAAGAAGAACTCTGTGACATACAGCTTCCGGCAGTCTTTCTCTCTGTATGGGATGCAGGTTCTGATGTTTGAGAACCAGTATTACGGGAATGGAATCAGGCTTACATCAGCCATACCAGGTGCCGACATCAAGGTCCTCATCAACTTTAATGCGCCCAACCCCCAGGACCGCAAGAAGTTCACTGACGACCTGCGAGAGTCTATCGCCGAGGTCCAGGAAATGGAGAAATACAGGATAGAGTCTGAGCTTGAGAAGCAGAAAGGGGTGGTGAGGCCCAGTATGTCCCAGAGCTCTGGGCTGAAGAAGGAGGCTGGCAATGGCAACATGAACCGTGCCAGTCTGGACGACACCTACACCATGGGCGAGGGCCTGAAGAGGAGCGCCCTCAGCAGCTCCCTCCGCGACCTCTCCGAAGCAGGCAAGCGTGGGCGCCGCAGCAGTGCAGGATCACTAGACAGCAATATGGAAGGGTCCATCATTAACAGTCCTCACATACGCCGGAGAGCCACAACCCCACGCAGCGAGGGCCCGCCCCGGGGCCACCCTACCATCCccaactcctcctccctcctcggGTCGCTCTTTGGCAACAAACGGGGGAAGCCTTCATCCCAgagccatcctcctcttcctctgcctgGTCACCCCACCCTCATCTCCCACACGCCCCATCCGTCCAACCTCCACCACACAGCCCAGCAGGTAGCCCAGGCCCAGCTCCACCACTCCCAGTACTGCCACGTCCAACAGAACCCCcctccctaccaccaccaccaccattaccacccCCCTCCCCATACACAGTACCACCAGCACCCGGCAGCATATGCATCCTCctcccacacacaccaacacacccaccCCCACCCGCATGTACCACAGCACAGCCACGGCACCCATAGCCAGCATTCCCTTCACGCCTCACACTCCCAGCATGCCCCTCACCACCACAGTCAGCTGCAGGGCCCGGCACCCAGCGGGCCCAAACCCAAACACAGTGGCATCAGCACCGTGGTGTGACCTCCCTCACTGAAATAGTgcgagagcaaaagagagaacgaaagagagctagagagagagagaaaagattgAATGAGCAAAaggaaagagtgagtgagtgaactTAAGGGAGGGACAGTCTCTTCCCCCAAAGGGACAGAGGGTATACTGTCAGTCGATGGCCTATCTACTGTGTTCCACTGCTGTGATGGAGATGGACCTCTGGCAGTCCCATGTATCCGCTCCCCCCTTCAGCTGCTCACCAATATGCTGGATGGAAACCAGATTCAATTCTTCCACAAAGGGCCTCAGCTCGAACCTTAGTAagggcctctgtctctctgtcagggctTCAGGGAGGTGTTTTGTACGGGGAAAcgctttccctcctcctccccatgaaCTCACACCAAACCCGGCCGTGACGGCTGAAGAGAACCGTGCATTCTCTTTAGGCCGCTGTCCACTTCTCCGTTCTTTCAATAGCCCGTCTTCCCTTCACGTAATCAGGAGACAAGACCACCTGGGATAGGCCTGAGAAAACATGTCTGACTGTTTTCTCTGTCACAATGGCATATTATATTGTATACAGTCTTTTTAAACAAAGCTAGCTTTTAACACTCTGCTTTCTTGAGGTTTCCAAAACTCTCTTCATTTTTAAGAATGCTATTTGTTCTTGCCTCTCCTAGAATTCATGTTGTGTAAAAAAGCTAGGTGTAATCATTTCACAATAACTAGACCAACGGACAGGCTAACAACAGTCTCAATCGTAGTAGTTCTAGTGTTGTATTTACTGTAGATGACAGCTTTACGTGTTGTCTCCTAGCACTCATTTGATAAATGTGCCAATTACTAATGCATAAACGATTTAGTCTAGACTTCATGTGCAGTATATTGTGCGTAAAGTACCTTGTAAGATTATACTTACAACCATTATTATCATTAGAAATCAACTGTATCAGTATTATACTGACTCTATGGGAACAGGATAGATGGGAAGGGGGAGTGGAGCCACGTTGTCAGGCAGTCCAATAACCTACTCTGGAACCTTTTGCCTTTCAAACAGAGCATTGAGAGACTGGAATGCAGCTGTGGCACATGGCCCTCCTAATGCTGGGCTGTCATGTATAAAACCTCAAGAGAGAACAGATATTGGGTGTCTACTGATCATATGTTGTTCCTATGCTGGGTGGATGGGTCCCGCTCGGCTCGGTGTTGTACTTCGATATGAAGTACGGACGTTTAGTACTGTGAGTACGGGCGTGTAGTACTGTGAGTACGGGCGTGTAGTACTGTGAGTACGGGCGTGTAGTAAGGTGGCAGTGGTGGAAGGGTCACAGATCTCGTGTTGAGCTCATGGCCTTCTTTTGGTTGTATGCTGGCTTAAGCTCACAGCGTTCCTGACCTCTCAAGACACTTTACGCGATAGAAGTTGAGGCTCGCGTCACTTTACTGATGGACCCGCAGTAAAGCTGACAAATGTCTCATGCCTTTTGAAATATGAAGCAGCTGCATTCTTGACTCTTCAAATCAAAATACGATAATcctttatttgatttttttcatCATTTACTGTGTCTTTGTTTTCATCACAAATCCTGAGTAGGTGAGTGACTAGAATAACCTtaagtatgtagtgtgtagttttTTGTTTGTCATCTTAGTTTTTAtcattatgtacagtatgtgcaatATCTTCGTACTGGTTTTGTAcattcaaacaaaaacaaaaaaaaagtgtcccttctgtttgttttgtgtgtttccaTGTTGCATCGTTATTTATTTAGGTTGGAACCCTGTCGTTCTCTCTCAGTGGCTTAATGTGTGGCTGTTCTCATGGTTCTCTGAGAAACACGGTCCTGGGATTTTCGAATTCAGTGGAATGTCGGAAGTGGTTTTGCATGTAATGTTATTAATGTGAGGCTATCCTCAGCACATTGTATAACAAATCAGTGTTACCATAGTCGATTGAAGTGCaatcacataaaaaaaaaatacagacttGTAAGGCCCTTTACAGGTTCAAGTCTGTTATCATGTTGTCCTGGAAGAGATTCAGGTGaattcttattttttttcttcagatgATATACTTATTTAGACAGTTGAcggcagtgcttgacttggactgaaataggttccggtactcattttgggtgccagtactgtttatatttaggtacTGGAGCTCCTCAATACTTATGAGCTAaaattctataagaggaacagaaCCTCAAGCAGTAGTATGAAGTGCCGGTACTCTGCTCCGGTgtcccaagtcaagcactggttgACGGTAAAAAGAAGGAggaatgtgtgtatatattttaatAAAGGAATATGCTTCCCTCTGGGCAGAACAGAAATATTTTGCTGGATAAGCACATATGAAGGAGCGCTTTCATTTTTCAGGAAATCCAGATCTAATACACAGCAAAGAAATGCAAATGAAACAAAGGAACTGGGTTATATGTAAAGAAAAATATCTTTCTACATTCTACGAAATGAGAGTATATTATCGCGTGTACATTAAAGTAAAAGTCAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910101 lncRNA upstream 234458 37100297 ~ 37100529 (+) True G799630
TU910097 lncRNA upstream 240026 37094756 ~ 37094961 (+) True G799626
TU910053 lncRNA upstream 286684 37046718 ~ 37048303 (+) True G799582
TU910061 lncRNA upstream 309103 37025627 ~ 37025884 (+) True G799590
TU910043 lncRNA upstream 312406 37022222 ~ 37022581 (+) True G799573
TU910245 lncRNA downstream 13143 37373159 ~ 37377209 (+) True G799762
TU910265 lncRNA downstream 55691 37415707 ~ 37417325 (+) True G799779
TU910266 lncRNA downstream 56535 37416551 ~ 37418064 (+) True G799780
TU910271 lncRNA downstream 78675 37438691 ~ 37438943 (+) True G799785
TU910275 lncRNA downstream 85128 37445144 ~ 37446422 (+) True G799789
XM_021615545.2 mRNA upstream 168982 37102639 ~ 37166005 (+) True nup210
XR_005053235.1 mRNA upstream 271303 37030760 ~ 37063684 (+) True LOC118966039
XM_021615541.2 mRNA upstream 364120 36961315 ~ 36970867 (+) True LOC110531987
XM_021614398.2 mRNA upstream 381612 36941509 ~ 36953375 (+) True LOC110531160
XM_021615538.2 mRNA upstream 392747 36938266 ~ 36942240 (+) True adtrp1
XM_021615555.2 mRNA downstream 2012 37362028 ~ 37364848 (+) True gp9
XM_021615557.2 mRNA downstream 19933 37379949 ~ 37424276 (+) False raf1a
XM_021615558.2 mRNA downstream 19936 37379952 ~ 37424276 (+) True raf1a
XM_021615561.2 mRNA downstream 150527 37510543 ~ 37516918 (+) False LOC110531997
XM_021615560.2 mRNA downstream 150532 37510548 ~ 37516918 (+) False LOC110531997
TU910049 other upstream 299069 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1018182 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1962839 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2778365 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 3213247 34121422 ~ 34121740 (+) True G796495
TU910348 other downstream 207229 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 710200 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1428045 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1572936 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1708356 39068372 ~ 39072225 (+) True LOC110532019

Expression Profile