RNA id: XM_021615555.2


Basic Information

Item Value
RNA id XM_021615555.2
length 2655
RNA type mRNA
GC content 0.45
exon number 2
gene id gp9
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37362028 ~ 37364848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgatttatttaacaccttttttggttactacataattccatatgtgttatttcatagttttgatgtcttcgctattattctacaatgtagaaaatagtacaaatgaagaaaaccccttgaatgaggcGTTCTAAAACTTTTGGCCGGTAGAGTACATAGTCATTGTAAAAATAACAATACATAAACACGTCGCACTTCTGTTATTATTGAGCCCGGGTGCTTTAGCTTTGAAAATAGCGGAGTAGAAGTGCTGATTATGGAATTCTAAAAAGGGTGATTTATCTAAAATGATGATGAGAAGGGACCAGGTGGGAGAAAAATAATCTGTACACAGGGAGTACATTATCACTACTCTAATCCCAATATTTGCAGTGGAGATCATATGAGGTGACGACCTTTATATGGGAGGATGAAGATATGATTTTCAACATATCGCCTGTCTCTGCCAGCAACATTAGAGAACTGTCACTCGCTGTGGCTCTGACGGACTGTTATAACGTTCCCCGCCcctacacacgcgcacacactctctttctctcatcccaTGCTGCAAGCTGTTCTATCAGGCGCAAGACACACAATTTAACAAGGGCAAGACAAGAGATGCCTCATTTCAATGTGCATTCAGTttgtccagtgagtagtgagtcAGTAAGACCCCCAGTTATCGTAAAACTTCAACTGTGACAATGTTGACAACgctaaataaacaaatatatgaCTTATGGTATGCATGTGTTGGTCTTTGGCTTCTAATGTGTGTTATCGTGTCAGTCTTTTTCCTTTTATCTTACCATGCAAAATCAAGTAAAGCCCTTAGAAAAGGTACCCGTAGAACGTGTTATCTACTTCTTAGATAAATGTTGCATAGCTATCAGTGAGGTAAATAAAAAAAGGAATGTATTCTGTATTTTTGACCTGTGTTATGGTTAGTAAAGATGGTAATACACAGTGTAACCACTGGAGGGTGCACACATGAATAGAGATGAAGCTGTGTCAGCACGCCACCTAGTGGTGTGATGGGTTTCTAGACAGTGTTTACTACTTGATCATACTACTATAACACAGTACAGTAAAATGTGAAGTTATGCCAGCACATGTCCTAATTCGTCATGTTACCTCTGGAGTAAGATTGTGACTGGGTAGCAGCATACTCTACATAGAACTGATAGGCTACCAGCTGACAGTAATGGTAGGTGTATAGCAATGAGAAGTGAATGAGCATATTGTTGGCAGCTATGGAGGCTCATACGAAGTATATAATAATACCACATTGGTCCTCATTGGTTAAATGTATAGCAGTACTACATTTACAAACTCACTTAAAAGCCTCTACCATCATTTTGGAAGATAAACCCATATCTCCTCCCAACAGAGGTGTTTCCCTCTCATCACGTGACCCAAAGCTGGCCCTGTCAGTGGTGGTTCTCACACGCTCTGTCGCTGTTGCATATGTCCTGTGGAGATTTGGCAGTTAAACACGTCTGTTATAAAATGGAGAATAGTGGCTGACTGGAAGGACATCTTCTAGAACTCTAGACCGGCACTGGACAGAACACCTGGCGAGCACCGGCCTCAATGATGAGTGGAATTACAAGAACTACCTTCTACGTTGTCTTGACACTGAAAGAATGCTCTTAGGTTCAGGGAtagccatcctcctcctcctggccaCTACCAGTGCACAGCCCAGCACAAAGCCCTGCCGCTGTTCAGCTCTCCAGCCTTCAGGGCTACAGGTTAACTGCAGCTCCATGAGCCTCATGGAagtgccccctctctctccagacacCACAGAGCTCTACCTCCAGGACAACCAGCTGTCCACAGTACCCTCAGGGCACTTTGACAGGCTGCAAGACCTGAGGAGGGTCACCCTATCTGGGAACCCTTTCCACTGCGACTGTGGCATCCAGTTCCTGAGGACCTGGCTGAGGAGGAACTGGGCTGTCGTGTCTGGTGGAGTGCCCACCTGTGCCAGCCCCAGTGGTGTGGCACACACAGCAATCACTGCACTCAGTGATGCCTACTTCTCTTCCTGTGCCCAGCAAAGCTGTGCAGGGAGGGTGTATGACACCATGGTGGGGGTGATGCTGTGTGGGCTCATCGGCCTGCTGCTGTGGGGTCTGAGGCTGGCCAAGAACTCCACCTTCACTCTGGATATCGATCAGAGACACGCAGGGTTGGAGGTGGACTCTCTGAGGTCGCTGAAGCCCAGACACAGGAGGCTCCAGAGGACTCTATCTGAGGAGAGTGAGAACTCTGCCTCTCTCACCTGGACAAACGACCCAGAGAGACCGCTGATTAACATGGAGATATTGCCCCAAATACTGGACGTATTGCACAAGAAACACAATATAAAGATAAAGACAATATAAGATTTTGGGATGATTGTCGTGGACCATGGGGTGACTGGGGATTTAAAACCTAAGCTGGCGATTGAGTGTTTTACCCTCTGTTGGAATGCCATTTTTCAGACTGTTTTGACTCTTGCCTTGAATTGATTTTCTTTTGTCATGAAGCCTGTAAAATCATGCTCTGGAACTAATGTCTCCCATTGTTGTTATGTAACAGATTTGTGTTTTACACTTGTACACTGTATCTCTCCaatacaaataaatgtaattgAGTATAAAGTGCTCACGTCAAACACA

Function

GO: NA

KEGG:

id description
K06263 GP9, CD42a; platelet glycoprotein IX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910101 lncRNA upstream 261499 37100297 ~ 37100529 (+) True G799630
TU910097 lncRNA upstream 267067 37094756 ~ 37094961 (+) True G799626
TU910053 lncRNA upstream 313725 37046718 ~ 37048303 (+) True G799582
TU910061 lncRNA upstream 336144 37025627 ~ 37025884 (+) True G799590
TU910043 lncRNA upstream 339447 37022222 ~ 37022581 (+) True G799573
TU910245 lncRNA downstream 8311 37373159 ~ 37377209 (+) True G799762
TU910265 lncRNA downstream 50859 37415707 ~ 37417325 (+) True G799779
TU910266 lncRNA downstream 51703 37416551 ~ 37418064 (+) True G799780
TU910271 lncRNA downstream 73843 37438691 ~ 37438943 (+) True G799785
TU910275 lncRNA downstream 80296 37445144 ~ 37446422 (+) True G799789
XM_021615546.2 mRNA upstream 2012 37179890 ~ 37360016 (+) False iqsec1a
XM_021615547.2 mRNA upstream 2012 37278812 ~ 37360016 (+) False iqsec1a
XM_021615549.2 mRNA upstream 2012 37293440 ~ 37360016 (+) False iqsec1a
XM_021615551.2 mRNA upstream 2012 37297203 ~ 37360016 (+) False iqsec1a
XM_021615552.2 mRNA upstream 2012 37316974 ~ 37360016 (+) False iqsec1a
XM_021615557.2 mRNA downstream 15101 37379949 ~ 37424276 (+) False raf1a
XM_021615558.2 mRNA downstream 15104 37379952 ~ 37424276 (+) True raf1a
XM_021615561.2 mRNA downstream 145695 37510543 ~ 37516918 (+) False LOC110531997
XM_021615560.2 mRNA downstream 145700 37510548 ~ 37516918 (+) False LOC110531997
XM_021615562.2 mRNA downstream 145706 37510554 ~ 37516918 (+) True LOC110531997
TU910049 other upstream 326110 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1045223 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1989880 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2805406 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 3240288 34121422 ~ 34121740 (+) True G796495
TU910348 other downstream 202397 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 705368 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1423213 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1568104 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1703524 39068372 ~ 39072225 (+) True LOC110532019

Expression Profile