RNA id: XM_021615579.2


Basic Information

Item Value
RNA id XM_021615579.2
length 4181
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110532007
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37923872 ~ 37948962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGTCTCTTCAGCTGTGTTTTCACCTCAGGTGGACTGTGTCTGTACTGTATTTAGGGACAAGCCAACACTCTGTGGTATCGGAGTACCATATCAGCTCACACATCTGGATACAGTATGGGGACTAGAGGTCTGCTCATGACACTGTGTCTGGGGATTGTCAGTGTGTCCTCTGAAGAGTTACTGCATCGACAGAAGAGAATCTGGATTGTAGACTCTTTTAAGATAGAAGAGGCGAGGCCCGGACCTTATCCTTATGTACTGGGGACCGTTCAGATTGAGAAGGCGTTCCGTGTGGGTTTCCATCTACATGGTCAAGGGGTTGATCTGGAACCCAGAGGAAAACTGTCCATCAACACAGACACCGGAGATATCGTAGTTCATGGAGAACTAGACTACGAGCTTTACCAGAAACTTAAGCTGACATTTGAGGCCCGAGATACATCCAATAATGCATTGGACACCCGGCTGGGAGTGGAGGTGGAGATTCTAGACATCAATGACAACCCCCCAGTTTTCCAGAGTAACACTTACACCATCAACCTGAAAGAGTCTACTTCACAGGGAGATTTTGTGACAGCTGTAGTTGCAACAGATAAAGATCAAAGCAACACAAACAATGGCACCTTTGACCTGAAGATTGTCTCCATCACCCCTACGCCCCCAGACAACCTGGAGTTCTTCCTTGAGCAAAGTGGTCCAACTGGAATCATCAAATTCAAAGGGTGTCTGGAGCACGAGAAATCAAAGAAATACACCATCCTGGTGGAGGCTAAAGATCGTGGAGAGGTGGTTCAGCTCTCCAGCACCTGTACAAACATCATCACTATAGAGGATGGAAACAACCATCTGCCTGTCTTCACTGGGCAAACGGGTGCAGGAAGCatcaaggagagagacagaggtgatgTACCAATTCTTCGGCTCCAGGTTTCAGACCAAGATACCAAAGGTACTGTAGCCTGGAAGGCCAAATACACTATCCACGGAGACAAGGACCAGAACTTCAGAATCACCACTGATCCAGACACCAACGAAGGAGTCTTGTTTGTTGAAAAGCCTCTGGACTACGAGGATGGCTCTCAGAGGAACCTGTCAGTCAGTGTAGAGAACGAGGCGCCCTACTTCTCTTGTAAGGTCAAAGGTCGTCCTGCCATGGGCCTGTGGAATGTGGTCACCACAGGGGGGGTAACTTTGACAGGTGAACAGCCCCTGCTGTCCACCCGCCAGGTGACGGTCACGGTGGAGGACATCAACGACCCGCCCATCTTCACCCCCACCATCAAAAATGTGACGGTGGAGGAGAATGTGGAGGTTGGTTGGTACCTGGAGACGTTCACTGCCATCGATCTGGACAGGAACCATGCCAACACCTTCAAGTACGTGAAAGAAAAGGACCCTTCTGACTGTGTGGCAGTAGACACAAAGACCGGCAAAATAACCACAACTAAGATCTTAGACCGAGAGTCACCTTATGTGAAGAACAATGTCTATCAAGTGACAGTGATTGCTATTGATGATGGCCAGCCTCCCATGACCGGAACTGGAACGCTCAACATCCACCTGAAGGACCAGAATGACAACCTTCCGGAGCTTGAGATGGCCACCATGGACATGTGTCTTTCAGATGAGCACACCGAGGTCAACATCACAGCCTACGACCTGGATGAAGAACCCTACAGCGGACCCTTCTACTTCCAGCTCCAAGGGGACGATGTCAAGGGCAAGTGGAGGATTGACCCCGACAATGGCTACACAGTGAACCTGGTGAAGGAGAACACAGTGTACGCAGGTCACCACGAGCTGCTGCTGAAGGTGTTTGACCTGCAGGGTCAGGGTGCCCTCCACAACCTGTCTGTTACCGTGTGTGACTGCTCCAGGGTGGCCAGCTGCCGCATGCGCAGGGCCACTGGATCCAAGATTGGAGAGAGTGCTGTAGGGATTGTCATTGCTGCCATGTTGCTACTACTAGGTTTTCTACTGTTGGCTCTCCTGATGACTTCTAAGAGAGATCTGAAGCTGATCCCTCTCGATGAAATCTCTGGAGAACATCTGCTCAAATCTAACATTGAGATCCCAGGAACTGATTGCAAGGTGCCTACGGCTACCATACTCCAAGTGGACAGCCAGGTGGAAACGAAAGCTGCTTTTCAACCCACCAAGAAGATGTTGGCTGTACAGAAGTCAGCCAGTATGCGAGCACAGGTACGTTCAGGATATTCCAAGTATTCCTCCTCCTACCAAGAGCAACAACAGGGAGAGTTTCAACGAGGAACCACCCTGCGCAAGAGTGCGCCCACAAAATTACGCTCCAACGGTTATTATGAACAGGTGTCAATGGTGAGCAGATCAATGAAGACAAGAACAAGATACTCCTCATGGGAAGAAGATAATTGTCTCGACAAATCCGGGCACTTGATGACCCAACTGAATCAGAGGATGTACACCCTGCAAGTTCAAGGAGAAGAGCTGGGGGACTATGCCCCGCACCCCTACGTTGAAGAGGGGGACCTAGAGACAGACCTCCAGCTGGATGCTATTTCCATCCCTGAGACCCTCTTCGACCAGGACACGCTCCTCTACCTGGGCCCCAGGTTCAACACCCTGGCCTCCATCTGCAACACCGCAGACCTCAGCGCATCCTAAGCCCATCTTGCCCTCACCCTCTGGGGCAAAAGGCTCTGCCAGGACTGGCTAGATAGCATTGGCATAGCAGGCTAGGTCACCGGCCACATTCCTGGATTATAAACTGGACTGGATCACTCATTCTTCAAATGAGGTAGAACAGCAAACTTGCTCTTGCAAAATCTGGAAGcagtgtcattttttttttttttttacaaaaaccaTCAAATGCACACAGGACTATGAAGATCAGTGATCAATCAATACAAAGACCAAGATGGAACTCAGTGTTGAAAGGAGAACAATGAAATCGaccactgagaacacacacagagagagacatgtagtggGAAAATACTTGCATGGCATTGACTTGGCTCTGTGCTTTTATGAATGCGATGGCTGCAATTTAGAGGTGAATTAACAGTGAACATACCACACCATCGCTTACCTCTTTATTCTTCAGAAAATACATTGAGTCAGAATAGTGTAATATTGTTTTCTAcgatggttatgatgatgattcccaaatcaaattgtatttttcacacgcttcgtaaacaacaggtgtagactaacagtgaactgcttacttacgggcccttcccaacaatgcagtgaaaCAATATATACATAGTAGAAAAAAATTGAACAAAAAGtataaaaacaataacacaaggaataaatagaCAAGTAATTaaagcttggctatatacacggattaccagtaccgagtcaatgtgcaggggtacgaagtaattgaggtagatatgtacatacaggtagggatatagtgactaggcaacaggatagataataaacagtaactaACAGCAGTGTATGGGGTGAGTCAAAAGAGATTAGCGCAAAAATAATCAATGCAGATAttccgggtagctattggttaactgtTTAACTATTTAGAGGTCTtttagcttgggggtagaagctgttcagggtcctgttggttccagacttgccgtgcggtagcagagagaacagtctatgatttgggtggctggagtctttgacatttcTTAGGgtattcctctgacaccgcctggtatagaggtcctggatggcagggagctcggccccagtgatgtgctggtccgtacacactaccctctgtagcgctttgtGGTCGGATGCCAAACAGTTGCCAAACCAAGTGGTGATGCACCCCGTCAAGAtattctcaatggtgcagctgtagacatttttgaggatctgagagcctatgccatgccaaatcttttcagcctcctgaggaggaagaggtgttgTCGGCCCTCTTCACagctgtgttgatgtgtgtggaccatgatagttcctaAGTGATGTGGactccgaggaacttgaagccctCAACCTGTTCCACAACAGCCCCATCTATATACATGGGGGCATGCTTGAATTACCAATGAAAGCTTGGGTTGAAAGTTTTGCGCTGAAGTCTGGTTGATTTATTTGTTTGTGTTGGTGTTGGCTTTGAATGTATATTCTATAAGTGTTTTTTGGTATCTAAATAAAGGTTTTACGTTCATTTCGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU911303 lncRNA upstream 3505 37920109 ~ 37920367 (+) True G800727
TU911281 lncRNA upstream 16292 37907267 ~ 37907580 (+) True G800705
TU911157 lncRNA upstream 94639 37825979 ~ 37829233 (+) True G800589
TU911151 lncRNA upstream 109014 37814445 ~ 37814858 (+) True G800583
TU911144 lncRNA upstream 117617 37805966 ~ 37806255 (+) True G800576
TU911357 lncRNA downstream 21496 37970458 ~ 37973015 (+) True G800776
TU911371 lncRNA downstream 40402 37989364 ~ 37989649 (+) True G800789
TU911416 lncRNA downstream 101371 38050333 ~ 38052651 (+) False G800826
TU911417 lncRNA downstream 101371 38050333 ~ 38055272 (+) True G800826
TU911426 lncRNA downstream 121254 38070216 ~ 38071433 (+) False G800834
XM_021615578.2 mRNA upstream 17942 37863680 ~ 37905930 (+) False LOC110532006
XM_021615577.2 mRNA upstream 17942 37863685 ~ 37905930 (+) True LOC110532006
XM_021615574.2 mRNA upstream 194028 37721066 ~ 37729844 (+) False LOC110532004
XM_021615575.2 mRNA upstream 194028 37721066 ~ 37729844 (+) False LOC110532004
XM_021615576.2 mRNA upstream 194028 37721066 ~ 37729844 (+) True LOC110532004
XM_021615591.2 mRNA downstream 28462 37977424 ~ 37979829 (+) True LOC110532009
XM_036987921.1 mRNA downstream 72719 38021681 ~ 38030421 (+) False LOC110532011
XM_036987920.1 mRNA downstream 72720 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA downstream 73343 38022305 ~ 38033223 (+) True LOC110532011
XM_021615595.2 mRNA downstream 919307 38868269 ~ 38884647 (+) False LOC110532014
TU910348 other upstream 353461 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 887954 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1607067 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2551724 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 3367250 34555931 ~ 34556622 (+) True G797056
TU911427 other downstream 121254 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 839099 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 983990 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1119410 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 1284103 39233065 ~ 39237261 (+) True LOC110531165

Expression Profile