RNA id: XR_002474794.2


Basic Information

Item Value
RNA id XR_002474794.2
length 1742
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110532016
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38545204 ~ 38548047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCCGAAATCGCACAATCATGTCCGACATCGCTCTTCCACCACCGCCTGATGAGGACGAACAACCTTGGCTGTATCtaaaataaatgttgttttatttCCTCTGGATGAAGGATTCATCCTACCGGATGGAATGTGTGTTATGTTTACCAAAGTTCAGGAAATACTAGCGTTCAAGAACTCGCCGTCGAACCTACAAGAGAAAGCATGTACACCATCTGAAGAAGATCTTATCAAGGCCCACACTGCGCTCCAGGATTGATGAAGCCTCCAAGGAAATGAAGAAGGTGACTCCATGAGAGGAGTTGACCACATCGCCACCACCACCGACTGCTGGTCTGCAAGAAGACGGAGCTTCATTGGTGTTGCAGCCCACTGTAACACCAACAGTCTCAACAAATGCTCAGCAGCCCTGGCCTGTAAACGGTTGAGAAGATCGCACACCTTTGATGTGTTAGCAGGTGCCCTAAATGACACCCATTTGGAGTTTGAAATCCGGATTAAGATTGTGAGAACCACAGACAATGGCTCTAACTTCTTGAAAGCTTTCCATGTTTTTGAAGCAGCTCAGCCAGTACAGGAAGTTTGTGAAGTTTGTGGAGTTTGTTGACGTGGCAACGATCCTGAATGAAGATGATGGTTTTGAGTACCAGCTGCCTGCCGCCTACTCAACTTAGTATCTACAGTCGATGCCCTGAAAGCAACATTCAGTGAGGCTTACAAAAAAGGGTCCCGTTCAACATTTGGCAAGTGCCAAAGACTTTGGAACAAATGCAGAAGATCCACACTTGCAGCCGAAACGGTTGAAGATGCCTGTTACCTCCAGCTGCTGCCCCCGAATGCTACAAGGTGGAACTCCTGGTTCATGGCTGTAGAAAGACTCCTGAGGATCATCAAAGACAGAGGAGTGGCAGTCGTCAGAGTTATCCGCACAGACTTCGAGGTTCCAATgtTCAATCCAGCAGAACCCGCCTTCCTCACAGAGTATGCTGCCACCATGAGCCCAGTCGCAAAGGCCATCAATATCCTGCAGGCTGAAACCAGATGGGGTGGCTACTTCCAACCTCCTGATCACAAAACTTGACCGAATCAAGTTGTCCCTGAAGTACTGTAAACCTCTGGTGGATGTGCTACAACTGGGACTGAAGAAGCACTTCAGCCACGTGTCACGATCCTGAGCTGATGGCAGCTGCAATCCTTCTCCCCAAATTCAAAACAACGTGGACAAAGGATGACGCCACCATCAAAATGGGAATGGACTACATCAAGGACCACCTGGAAGAACCCTTGCAGCAGCTAGGCGATGGCACCAGTTCATCAGATGAGGAGGACTTCTTCTCTGCCATGAAAACGTCTCAAGCACAAGAAAGCTCCAAACAGCTGTACGGACGCCTGGCCTGTTCAGCTGATCATATGGAGTTGCTCAAGTCCTTCCCGGCAGTCTGTAAGCCGCCTCTGAGGTTAAACACACCCTTACCTGCATCAGTAGCCTGTGAAAGGCTGTTCAGGATTGCAGGATTTGTTTACAGCCCCAGGAGAGCAAGGCTGGACTCCAGAAACTTTGAAAACCAGCTTTTTACTGAAGATGAACCGTAAATTCAACTTCAAGTAATGACAGCTTAACGCTAGCAAGCCCAAGGACACGGATGGCTTATGCATTTTGTTAATTTATGTTTAAAATTCACAAGTTATAGGTGTCCTTGTTACAAAGGACTGACACACTGATTTCTAATACTGTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912147 lncRNA downstream 460 38544466 ~ 38544744 (-) True G801515
TU912141 lncRNA downstream 1664 38543101 ~ 38543540 (-) True G801509
TU912140 lncRNA downstream 2719 38542222 ~ 38542485 (-) True G801508
TU912137 lncRNA downstream 3553 38541445 ~ 38541651 (-) True G801505
TU911751 lncRNA downstream 473732 38070233 ~ 38071472 (-) False G801139
TU912287 lncRNA upstream 102303 38650350 ~ 38650677 (-) True G801654
TU912288 lncRNA upstream 102828 38650875 ~ 38651091 (-) True G801655
TU912289 lncRNA upstream 103541 38651588 ~ 38651888 (-) True G801656
TU912300 lncRNA upstream 110349 38658396 ~ 38658623 (-) True G801667
TU912304 lncRNA upstream 111564 38659611 ~ 38659842 (-) True G801671
XM_021615593.2 mRNA downstream 104374 38052715 ~ 38440830 (-) False LOC110532012
XM_036987924.1 mRNA downstream 104374 38052715 ~ 38440830 (-) True LOC110532012
XM_036987933.1 mRNA downstream 567855 37961139 ~ 37977349 (-) False LOC110532008
XM_021615596.2 mRNA upstream 291218 38839265 ~ 38841685 (-) False LOC110532015
XM_021615600.2 mRNA upstream 448464 38996511 ~ 39012443 (-) False LOC110532017
XM_021615599.2 mRNA upstream 448464 38996511 ~ 39012444 (-) False LOC110532017
XM_021615601.2 mRNA upstream 448464 38996511 ~ 39012487 (-) False LOC110532017
XM_021615598.2 mRNA upstream 448464 38996511 ~ 39016353 (-) False LOC110532017
TU910862 other downstream 1200057 37344395 ~ 37345147 (-) True G800318
TU910500 other downstream 1637556 36827896 ~ 36907648 (-) False LOC110531982
TU909355 other downstream 2394567 36150338 ~ 36150637 (-) True G798993
TU909208 other downstream 2566089 35977422 ~ 35979115 (-) True LOC110531979
TU908458 other downstream 3023872 35492026 ~ 35521332 (-) True LOC118966032
TU912701 other upstream 293162 38841209 ~ 38841512 (-) True LOC110532015
TU912768 other upstream 418409 38966456 ~ 38996032 (-) True G802100
TU912807 other upstream 502483 39050530 ~ 39061381 (-) True G802138
TU912821 other upstream 526434 39074481 ~ 39074720 (-) True G802149
TU913322 other upstream 832703 39380750 ~ 39383210 (-) True G802602

Expression Profile