RNA id: XM_021615602.2


Basic Information

Item Value
RNA id XM_021615602.2
length 5434
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110532017
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38996511 ~ 39019461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAAGTCATGAGGAGGAAGATCTATATTGAATTCATATATATCCTATTACACTGCGTTTTTAATCATGTAATTATTATGTGTAAATAGTAAGTcatctaattcctaattctatgattGCATACTCCTCGCTCCTCTGCTCCTTATCAACATCTCTTTGcatgagaaggtcagaggggaggagcCTTTGGCTTTTCATCCAATGGCTTTTGAGAAGGAGATTTTCCAATGTTGAAGCAACGAAGGGGATACCAAAGACTGTACAGAATGTTTAGAGACTATGTGGGGAAAACGTTACCTCCAAGCCATTTTTCATTCTGTCCAGTCATAAATATTGTTCTATAGCTGTCTTCATTTCCGGAGCTGCTCCTGCCTGCGCTGAACAAAGATAATTACTCAGGAAATGCTTCGGCCAATCGGATGCGGCCTTACATCTCGCTTGTGAGAAAGGGGCCAGTCAGGGCCTGGCTACCATCAGACGGGCCTGATCGCCTTGCCTGAAGAGAGGAGCCTTCCCGGGCTGAGAGTGTCCTCCATGTTTTATAAGTGTTGACATAACAGTGTGTCAGGCAGCCATGCATCCACAGAGTCTGGCTGAGGAGGAGGTAAAGACCGAGTCCgagggggtagaggggatggATGTGTCCGTGCGATCCAAAGTGTCTGACCCTGGGTCAGCAGAGCGGGCGCTGGTGGCTCAGAAGAGGAAGGTGTCCAGCcccacccactcctccaatggcCACTCCCCCTCAGACACCTCCCCCAGCCccctgaagaagaagaagaaacctgGAGCCATCCATAGCAACAACAaagaccagGACGGCAGGAATGACTTCTACTGCTGGCTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCGAGGGTGTACCATGCCAAGTGCCTCAAACTGCCAGCAGAGCCCGAGGGCGACTGGTTCTGTCCAGAGTGTGAGAAAATCACAGTAGCAGAGTGCATCGAGACACAGAGCAAAGCCATGACCATGCTAACGATAGATCAGCTCTCATACCTCCTGAAGTTTGCCCTCCAGAAGATGAAACAGCCAGGGACTGAGCCCTTCTGGAAGCCTGTATCTCTGGAGCAGCACCCTGACTATGCCGAGTACATATTCCATGCTATGGACCTCGCAACACTGGAGAAGAATATGAAAAAGAAAATGTATGGCTGCACGGAAGCCTTCTTGGCTGACATGAAATGGATATTGCACAACTGCATCATCTACAATGGTGGTAATCACAAACTAACAGCAACAGCAAAGGTCGTTGTGAAGATCTGTGAACATGAAATGAACGAAATCGAGGTCTGTCCAGAGTGCTACCTGTCCTCGTGCCAAAAGAGGGACAACTGGTTTTGCGAGCCATGTGGTCATACCCACCCCCTGGTCTGGGCCAAGCTGAAGGGCTTCCCCTTCTGGCCAGCCAAAGCACTGCGGGAGAAAGATGGACAGGTGGACGCACGCTTCTTCGGACAGCATGACAGGGCGTGGGTTCCCATCAACAACTGCTACCTCATGTCCAAGGAGATTCCCTTCTCTGTGAAGAAGACCAAGAGCATCTTCAACAGCGCCATGCAGGAGATGGAGGTCTACGTGGAGAACATCCGCAAGAAGTTTGGTGTGTTTAACTATGCCCCCTTCCGCACCCCCTTCACGCCCAACAACCAGCTCCAGATGCTGCTGGATCCAGCCAACCCCGGGGCAGGGGCCGTGAAGATGGAGAAACCCGACAAGATGCGCTTCAACTTCGACATGACTGCGTCTCCCAAGATGCTCCTGGGCAAGAGCTCTCTGTCGAGCGGGATGGGGCGGAGGATCTCTCTGACAGACATGCCTCGCTCTCCCATGAGCACCAACTCCTCTGTACACACGGGGTCTGACGTGGAGcaggatgggatggagagagggcccAGGAACCCCCCATTCCACTACAGTGCTGGGGAGGAGTCTATGGACTACACCGCGTCCCCTGCGTCAGTGAAGATGGGCCATGCAGGCAGCTTGACGGGCAGCCCCAAGCCATTCTCCCCTGGTCTGGTGCCCAAGCAGGAGAGGGCCCCGGGCACAGGCAGCATCCTCAACCTCAACCTGGATCGTGTGAAGGCTGAGATGGACCTGAAGGAGCTCAGTGAGGCagtacagcagcagcagcagcaacaacaacaacaacaacaacaggggtCATCACTCCTCACCACCACCCCCAAGAGACCAATCAGGAGCCTGGACAAGACCATTGAGAGCTGCAAGGCCCAACTAGGCATTGATGGGATCTCTGAGGACGTGTATAAGGGCGTGGAACACAGTGACTCAGAGGATTCCGAAAAGTCTGACTCCAGCGACAGCGAGTACCTTAGCGATGAGGAGCACAGACAGAAGAGCGCCGCCCATGACGACAAGGACAAAGCAGAGAGGGAGTCAAGGAAGAGGCCCAAGGCGAGCACACAGGGAGAGGACAAGGAGGCAGTCACAGAGACCAGGGATAAAAAAAACTCTGAAGCCCTGCTCAAAGACAGACAGGGCATCAATGGCCCAGAGAGAGACTCCCAGGAGAAGCCCAGGACGCCCCAAACTCAGCCCCCCACAGACATGCCCAAGGCCccagaggaggggagggcaggcgCACCCCGAACCCTTGCTGGCCCAGACCAGGACTCCGACTCGGAGAGGGAGCTGGTTATTGACCTGGGGGATGAGCAGGGGGGTCGCGACCGTAAGGCCAGGAGGGAGCTAGGGGCTGTAGTCGCCAAGGCCACGAAGGAGCCCCTTGGCACCAAGCTGGAAGGCAAATTCCCTGTCGCGGTGGCACCCTCCCCAGCCTCTGCCACTTTGTCCAACCTCAAAGACCCCAGTCAGCCACTCATCAACCCTCCACTCAACCTGTCCTCCAGCACAGGCTCTGGTCAGCCCAACACGGCCCTCGGCACCACCCCCTCTCCAGCCCCCACCTCCGCCCCCACCCTCTCCTCCGCCGCCGTCGCCTTGGCAGTGAAGAAACAGCGCCCTCTGCTGCCCAAAGAGACGGCTCAGGCAGTGCAGCGTACGGTGGTGTGGAACCCGGCCAACAAGTTCCAGACGTCGTCCCAGAAGTGGCACATGCAGAAGGTGcagcggcagcagcagcaggaggagcagccGTCTACGCCAACACAAACACAGGCTCCTGTTCCGGTTCAGGCGCCGACGCAGACCCAGGCACAGACACGCAGCCCACAGCAGCTCCAGTCACAGCAGCAGTTGCCGGGATCTTCCAGTATGCGCTACCAGACCAGACAAGCAGCAAAAGCCGTGCAACAGAAAGATGGTCCCCAGACTTCCACCTCATCAGTCACCTTGGTCACCTCTggtgcctcctcctcctcctcctcctcctcttacctGGCAGGAGACTTTCAGATCCCCACAGCCTCAGCAGATGTGGCAGCTGACATAGCAAAGTACACCAACAAAATGATGGAAACGATTAAAGGAACAATGACAGAAATCTACAACGACCTTTCCAAAAGCACTTCAGGAAACACAATCGCAGAGATCCGGCGGCTGAGGATAGAGATTGAGAAACTTCAGTGGCTACATCAGCAAGAGCTTTCAGAGATGAAGCACAATCTTGAACTGACTATGGCGGAGATGAGGCAGAGTCTGGAGCAGGAGAGGGAGCGTCTGGTGGCGGAGGTGAAGAAGCAGATGGAGGTGGAGAAACAGCAGGCGGTGGATGACACCAAGAAAAAGCAGTGGTGTGCCAACTGCAGGAAGGAGGCCATATTCTACTGCTGCTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCTCACTGGCCAGAACACATGAAGTCCTGCACACAGTCAGCAACAGCTTCTCAGCAGGAACCAGAGGCGGAGTCTACTTCTGACCCTTCAGCCAAACCACCAGGTCACTCCTCCAGTACCCAGGCCCCTTCTGGTACAGGATCTGCTGCCACAGACAAAGGACCCTCTCCTACCTGCTGTGTAGACAAGAGCAAGGACAGTGCCAGTGCTACTGTGCCCTAACCactacactgcacacacacacacattttatacTCTACAATCCTGCagtctgtaaaatgtatgtatcTGTTGCAAAGAGACAGATCCAATAAACCAAGCCTTTTTGCGACCAACTAATCTGGGAATGTCCAGCGAATCTCCGTATGAAAGACCACAGAGGTATCAAAACCAACAGACACCCTCACCTTCTCCTAGCCAGGCTTAGGGCTTTAAAACGCCAAGAACACTCCTTGCATAAGGCCTGCTCCTCTGTGATTCAGCTGACTCATCCCCTGTCCCTTGTTTTGTTCAACGTCTGCCTCGTGATCTGATGTTTTAAGCCATCCTTCATCCTCCTCAAAGTCTATGTGCTAGACTGGAGGATTCACTTACCTTACTTGTCCTTGTGACTCGTTCATCTGGATATCAAACTTCAGTCTGTATACATTTTAACTCTTTCTTTCCTCTTTTCATCCTATTTGTATATCCCTCTTACCATCTATCCTAACGCTAGTTATCTACAGGAAAGTACATCAAAAGATCAGACATCAATGTTTTGTGTGTTCTTACAACAATCTTAAACTTGAAACCTGTGATGCTGCTCTTTAAAATATACCACAAGTCTTTATAGTTATTTGCCACCAGAAGTGAAACAGAGCACGTTACTGTGCCAGCCCTTTTTGGGACACCCAAACAATCTAAAATGTAAATTATTCTACATTGTCAATGCGGTTTAAAAGTTTCATCATTTTGTAAGGAGTTGACAAGGGTGTATTTGAAAATCCATGAACAGTATACACAGACATTTCATTCAAAGGGATAGCATTAAGTTGGTAATCACGCCACGTGTTACCTTATTGTTTCATACTCATTATATATCGTAGTTCCTCAGTGTATACATAGATTTTAATAAACTGTGATGTATAAAAACTATAAAGGTTAAAACTGTACAAAGTTTTTGTAATAAGACACATGGACAATATTTATAGTGCTCTGACAAGCatatgagatttttttttaaagtactgtTTGTGAATGAAAATCACTTTCCAAATGTTTTGAAATGGCTCAGCTCTGGAAATCGTTTTTATTTAAATGCATTGTAAGACTTTATATGAATGTCACCTGGACCCTCTGTTCAGATTCTGTCAGAACTATTTCTCATCAACCTTCGATGGTTTGGTTATTCGTTAACAATGTAAGCCTACTCCAGAATTACTTTCGACCATGATAGTGTTTTTGGAGGGTAAAGGAAACAGCAAAAGTGACTGACTGTATATTATTCTGAGCATGTTTATTTACCCCTTTGTTTGTCATATATTCTCTTGTTTACATATTGTACATATAGTAAATGGATTGTTAATGTCTTTAAGAAAAAAATTAAACAGGTCTGAccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912766 lncRNA downstream 30264 38964657 ~ 38966247 (-) True G802098
TU912764 lncRNA downstream 37259 38959040 ~ 38959252 (-) True G802096
TU912762 lncRNA downstream 38178 38958063 ~ 38958333 (-) True G802094
TU912760 lncRNA downstream 39224 38957087 ~ 38957287 (-) True G802092
TU912747 lncRNA downstream 62063 38932992 ~ 38934448 (-) True G802086
TU912792 lncRNA upstream 8132 39027121 ~ 39027434 (-) True G802123
TU912794 lncRNA upstream 10408 39029397 ~ 39029720 (-) True G802125
TU912800 lncRNA upstream 17998 39036987 ~ 39037227 (-) True G802131
TU912811 lncRNA upstream 44414 39063403 ~ 39063710 (-) True G802141
TU912820 lncRNA upstream 55221 39074210 ~ 39074441 (-) True G802148
XM_021615596.2 mRNA downstream 154826 38839265 ~ 38841685 (-) False LOC110532015
XR_002474794.2 mRNA downstream 448464 38545204 ~ 38548047 (-) True LOC110532016
XM_021615593.2 mRNA downstream 555681 38052715 ~ 38440830 (-) False LOC110532012
XM_036987924.1 mRNA downstream 555681 38052715 ~ 38440830 (-) True LOC110532012
XM_036987935.1 mRNA downstream 1019162 37962629 ~ 37977349 (-) True LOC110532008
XM_021615605.2 mRNA upstream 239499 39258488 ~ 39261833 (-) True LOC110532021
XM_036989282.1 mRNA upstream 248336 39267325 ~ 39270815 (-) True LOC110532022
XM_036987945.1 mRNA upstream 253833 39272822 ~ 39315559 (-) True baz2a
XM_021615609.2 mRNA upstream 306997 39325986 ~ 39334148 (-) False LOC110532024
XM_021615610.2 mRNA upstream 306997 39325986 ~ 39334154 (-) True LOC110532024
TU912768 other downstream 479 38966456 ~ 38996032 (-) True G802100
TU912701 other downstream 154999 38841209 ~ 38841512 (-) True LOC110532015
TU910862 other downstream 1651364 37344395 ~ 37345147 (-) True G800318
TU910500 other downstream 2088863 36827896 ~ 36907648 (-) False LOC110531982
TU909355 other downstream 2845874 36150338 ~ 36150637 (-) True G798993
TU912807 other upstream 31541 39050530 ~ 39061381 (-) True G802138
TU912821 other upstream 55492 39074481 ~ 39074720 (-) True G802149
TU913322 other upstream 361761 39380750 ~ 39383210 (-) True G802602
TU913332 other upstream 392353 39411342 ~ 39414326 (-) False G802609
TU913331 other upstream 392451 39411440 ~ 39414326 (-) True G802609

Expression Profile