RNA id: XM_021615603.2


Basic Information

Item Value
RNA id XM_021615603.2
length 4743
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110532019
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39064150 ~ 39072385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGacggtttcctcattaccatacAAAATAGACGTCAGCATTTGTGCAGCTGGCAAAAAAAATACTGGTGGACGTTTAACTGACTTACGAACAAATCGCGTGTGTGTTTGGTACATCTTTTTTTGTTGTCGTTTCTTAGCTAACACATGACCTGCAATTTACCCAGTGTACTGGCAGTGGTGGAGGGAGCAAAAGAGGAGAGTTTGCATCTGTGTGCAAGCGGGGGGCAGCGAGTGACTGAAGTGCGGCAGGGAGGGAGAGCTGTATCGGTCAGCCATGGGTTTCCGAAAGAAGAACAAGAGCCCGGCGGTGCTGAGCCACGAGTTCGTGATCCAGAATCACGCCGATATGGTTTCGTGTGTGGCTATGGTCATTCTCCTCGGCCTGATGTTCGAGGTGACAGCGAAGTTTGCCGTCATGTTCATCACTGTCCAGTACAATGTGACGCAAGGTCTTGATGAGCGGGCTGAGCCAGTGAACCTGTACCAGTACGGCCCTAAAGacatggccactgtgttcttctaCCTGCTCATTGCTGTCATACTCCACGCCTTAATACAGGAATACGTTCTTGACAAAATGAATAGGCGGTTGCATCTGTCAAAAACCAAACACAGCAAGTTCAATGAGTCGGGACAGCTTGCTGCCTTCTACTTAATCTCCTTCATCTGGGGCTGCAGCATCTTAACAGCGGAGGAATTTGCAACAAATCCTACTTTCCTATGGGCGGGCTATCCACACACCCACATGGTCTTTCAGGTGAAGTTCTTCTACATTTGCCAAATGGCCTACTGGCTCCACGCCCTTCCTGAGCTGTACTTCCAGAAAGTGCGAAAGGAGGACATTCCCCGCCAGCTCTATTACATTTGCCTTTACGTCTTCCACATCACCGGTGCCTACGTCTTAAACCTCCACCGGCTGGGCCTGGTGCTGCTTGTACCTCACTCCCTGGTGGAGCTCCTGTTCCACGCCTCGCGCCTGTTCTATTTCAGTGACGAGAACAAGCAGAAGGGTTTCACTTTGTGGGCGATGCTTTTCGTCATCGCACGCCTCGTCACCCTCACCCTCTCCGTACTGACATTCGGCTTCGGACTGCCCCGTGCAGAGAACCAGGGATTCTCATTGGCGGAGGGAAACTTTAATGTGCTCACCGTTAGGATGACATGCCTGGCTGCCATTTGCCTCACCCAGGCCTGGATGATGTGGAAATTCATCAACTTTCAGCTGAAGAAGTGGAGGGAGCACAGCCAGAGCCAGGCTTCCAAGGTGAAGGCTATCAGCCCAAAGAGCAAGCCCCACAAGAAGGACCCAGCCCGGGGTTCTGCCAACGGTGTTGGTCTGAAGTCTGATGACAAGACATCACCTCGGGCAAGAAAAGCCTTGTAGAGATGGAGGGCGAGAACTAAGTGAGGGGGCTGCTCTCAATGTGACACTTTTCACCACATAAAAAAAGTTAACTTACTGTTCGCCAAAACAACCACTTAAATGCACAAAGAAACCGTAACTTAACCATCTCTTGAGTTAGAACTGTTAAAAACTAGGTTCTGTTTTGATGACCTGATATGTTTGTGTTCAGTCGTTCTTTCTCAGGATGTAATTAATGTAGGCCGGGCATGGTCGACTGGTTCAACGCTTTAACTGGATAAATTGGTCAAAAAAGTGTCCCTTTTTGGAGAGGACTTCCTATTGCATCCAGCTTCAGGGCCTGATTCTATCAAACTTGTTAACCGGGTTTATGAGGAAGTCAAACAAGTACTGTTCAATTTGCATTAAAAGAGTGCATGTCAGGATTCATGTTCTCAACCGAACATGTGGAAGAAAGAATGGGGAAGCATTGGGCATGAAGTTTAGCCGTTTACCTGGCCGTTGGTTTCGATTGAATAGGGACCTCACCATTAACTCCTAAAAGGTGTCTGTTTACTGCCTGTATTGTTACCTGCCTTTTGCCATATGAAACCTGGGCTATTATGGGATTGAGGGCACTGTTTGTCATTAGTAGCCCCCATCTTCTGACTCAACTGGCCTTCATCCAGGAACCGGAACTCCTGACGGGAGATACTGTCTTTATCCATGCAGACCTAGATCTCTTGAGCAGATGATGCATTCGTGTAAGAGTAGGATTTGTGCAGGTGAGGTTTGTGTGTTTCATTCAGTTCAGGATTTCGATCCATGATATCTTCATTTAACAACGGCGGTCCTTTCTGCGCTCAAGTTGTTGTTAAGCTTCGAGGGTCATGGTTAGGTTTTGACGTGCTGTCATGTTTGAGTTTGCATATCTCAGAAGCATTCGGTGGCCTTTTTTTCACATCCGCTGGTAGAGTTTTGAGTTATTTATTTCAGTCGtatcttgtttaaaaaaatatttaaaaaataataatgcttTGGTAACTCTCTTAACCAGCATAGACGAGGTACAAAGTGAAACGCTTTGTCTCGGCGCTCAACCCAAATAATACAAAACTCCTTTAAGTGTCCTTAAAATGTCAGTGACGCGAGCTGTGAAATTTTCCTTGGGTTTCCTTTTCTGTTTGCCTTTTTTTTTATATCGGGGTATATGATGGCGGGCAGCTGCCTCCGGACACACCCACCTATTCTACTGTACGTCCCGTTCTCAGATGGGAGAGGAGTCTGTTGGTGCGTGTTTGAGCCTTTGTGCATTGTTACCTGTGGTAATGCTTCTGTTGCGTCCGTGAGGAAGTGAATGCGCCGCATGAGTCATGCTTTCGTCTTTGCTTTTTTTTCTtggtgaggggggaaaaaaaagttGTTGCCCTTGTGGTGTTATAGAATGCGACACAACCAGTTTATAGACTCCCCTCGTTTCCTTTTTGAATCCTCTACCTTGTTTTCATTTCACCCTTTTTTGTTCATTGGCGAAAGGCCTTTGTAACGAAGACGATGAGTGACAACTGAGTATATTCTATATAAAGTTAGTTGTTGGATGCTTATAACCTCTGGCCCTTCCTTAACCCTGTCCTGTATGAAAGAGATTCTGTGAGTTCTGTTTGCCAACTTTGgggtgacgggggggggggggggattcttgCTCCACCTTTCCAGTGATTTGGACGTTTGCCTTTGAACACTTATGTCCTACTGCAGACCCAATGCTGTTGCCACAAATGGGCCAGGTTACCACTCCTGCTATGGTGAACCTGATCTCAACTCTGCTTCACCAACTTCTCTGACTAGCGTTATAGTTGGCTGAATCATGTActggtctgggaccaggctacttgtTTGGTAGGTTGCGTATTTATTTTTTTTGGCAGGAAGTACATGAGGAGTCGTGACTAGTTTAGTCCTCATAGAGTGTTATCTTAAGTTGAGTGTGGAGGACTTGTGTTCTGTTATGTGGCAATGTCTCTGAGGAGGAAAGGTGGAGCAGAGGACCTTTTTTACACCagtctgtactttactgtatcgGATGTTTAAAATCTACATGAATCTAACGCTACACTGTGCTAAAAATGGTCCGAATTTTTAAAGCTATTTTTATATATTTGAAGAACTTAGTTCACCAATATTCGGCACACAGATATAAATATCTGAATATTATTTTGCATCCACATTGGCATGTTTTTCTACATCAAAAGACAAAGCTTTCTCCCCTTTCTAAGTCAGGGTTCACATGTCAGTTTCACCATCGTAGTCTATTTCATAGACTCGGCTGTATATATTGAGTAGAGTAAATGAGAACCACTCTGCCATAAGATGATGCTCAGAAAGCACTATGTGGAAACTGTCTACTGTAGttgtattgtattctactgtAATTGCTATCTGCTGTCCATGGCACTAGGTAGCAAAGCTACTGTTTTATCAGCAAGGATcctgatgtgtttttttttattgttctAAGGTGTATTTAAATCAGTGGGTCGTCCTCCTctactagcctgatcccagaccTGTGTCTTCTTTAGCCAACTCCTCTGCTAGCATGACAACCATAGTCAGAGACGTTGACTAGGATATTAGTATCTGATCAAGGACCAGGCTattgctgaccctgtaaaacaacacatttcacttcaCCTAGCTGGTGTGTGGCACTAACACATCGAACTATATACAACACTTTGGTGAAGTGTTAATTACAATAAAGGAAAGATGATCATTTTGCCCTTCATCGATTCCTTTATGAATTGATTTGATGTCATGATACACTGAGGGGCCCGAGTAACAGGAGTTTCTCTAGCCAGGTTAGGACACACGCTAACCCTGTAGCATTGAGAAGAGTTGTCTTCTCAATGCTACAACCGCTATTGAAATATACAGTGTCGTGAAGCATGACACCAATGGATGCCCCTGTGTACTGTCAGCATGTTGGGTTGTAAGCACTGTTCTGTAGCCTAGCGCGAGTCTTGACTGCAAGGACCGTTTGATCTCTGGTAAGGTGGCAATGGGCCAACACAATGCAAAGACCCATGCTAATCATTTATTAGTGTATATCAGCCGTTTAGGGGGCAACGACCATTTGATGCATTTGCAATGGGATGCATACTCCTTCATAGCAGCCAGGTACACAGAAGAGAAACATGGTTATGGTTCATGCACTGTCCTTGTTTTGTGTTTTTGCTGCTTGCTTCTAGattttttaaaaaattatttcAAAAAAAAACGTGTCGTCTCTGAAATGCTCTGGAATGTAAATTTATGCAAAAATCTTGGTATTTCTCAAATTTCTTTTGTTTGTACGTATTTCATGTTTGAATAAAGCCTTTGATTATCCAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912571 lncRNA upstream 19002 39044898 ~ 39045148 (+) True G801920
TU912566 lncRNA upstream 26907 39036987 ~ 39037243 (+) True G801915
TU912564 lncRNA upstream 28435 39035409 ~ 39035715 (+) True G801913
TU912558 lncRNA upstream 37764 39025915 ~ 39026386 (+) True G801907
TU912556 lncRNA upstream 39896 39023900 ~ 39024254 (+) True G801905
TU912579 lncRNA downstream 1290 39073675 ~ 39074102 (+) True G801924
TU912582 lncRNA downstream 2086 39074471 ~ 39074715 (+) True G801927
TU912830 lncRNA downstream 15226 39087611 ~ 39087840 (+) True G802158
TU912841 lncRNA downstream 25109 39097494 ~ 39097781 (+) True G802169
TU912909 lncRNA downstream 135152 39207537 ~ 39207784 (+) True G802222
XM_021615594.2 mRNA upstream 154432 38886624 ~ 38909718 (+) True LOC110532013
XM_021615595.2 mRNA upstream 179503 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA upstream 179503 38868277 ~ 38884647 (+) True LOC110532014
XM_036987920.1 mRNA upstream 1030927 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA upstream 1030927 38022305 ~ 38033223 (+) True LOC110532011
XM_036987940.1 mRNA downstream 38970 39111355 ~ 39237408 (+) False LOC110531165
XM_036987942.1 mRNA downstream 38973 39111358 ~ 39237408 (+) False LOC110531165
XM_036987943.1 mRNA downstream 38978 39111363 ~ 39237408 (+) False LOC110531165
XM_036987941.1 mRNA downstream 95648 39168033 ~ 39237408 (+) False LOC110531165
XM_036987944.1 mRNA downstream 167794 39240179 ~ 39256626 (+) True LOC110532020
TU912489 other upstream 130282 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 275796 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 992717 38070216 ~ 38071433 (+) False G800834
TU910348 other upstream 1493739 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 2028232 37034418 ~ 37035918 (+) True G799578
TU912870 other downstream 160680 39233065 ~ 39237261 (+) True LOC110531165
TU913019 other downstream 343490 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 343490 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 343490 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 343490 39415875 ~ 39417460 (+) False G802324

Expression Profile