RNA id: TU912870


Basic Information

Item Value
RNA id TU912870
length 3871
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110531165
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39111355 ~ 39237408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGGCCAGATGGGGATGAACCCCATGGTGATGGGACGTATGCCGATGGGGCCTGATCAGAAATATTGCTGAACCTGAGACCGAGGCGTGTGGTGGAACAGAAACGGACTCAATGTGATCCCTttcagagagaggagtgcagTGCTCAGTGTGTGCCGGACCAAATGTACCTGTGAGTGGTATTCTACTCCCACCAGTTGGGGGTGCTGTTCCTCTGAACTCAAGGACAGTCTCACAAAACAAGACCGAGGACACACTCTATTCTACATGCACTTACATGAGACACGCCAtgacccaccaacacacacacacacactcaaaaacaGTCACGTATGTAAAGCGGAGAcgcactgtgacacacacacacaaactgacagATACACAACTGTTTCATTCCTCCATCAGTCTTTAGTGATGTAGTTTCATTAGTCCTCTCTCTGGGTTCTAtgtctgtactgtactggacACACGCCACTCGCTGGACCAAACAGACTGAAGCGGGGGACACCCAACTAATAATGATCTGGCTCTGACAGACACGGACGGGGGGACGGATGGACAGACATGAGAAGACATCCTCTCGTGGGATGTAACTAACGCTTTGTTCACCCCTGGGCATGGGAATTCTCTCTCTGCTTCGAAACATTGGAGGAATTATTCCCTAGTTCTGGTCCTGAAGGACCACTGTGTATGCAGTGTATCCCATCCGGTCTCTGAATCCACTCTTAATGAATGACATAATACACATGATGTAGTCCCATTGCTGGAGAAGGTGGGAGTTGCTTGTAATCACTGACACAGGGTCAGCTATTTTCACATCCCCCTAATAGTTAATATTAGGgacactgatcctagatctgtggtcaTGGGCAACTTCTACCTCTATAAGATAAATTACTATACTGATGAGCAGGCCTATAGTCAATGAAACAACTCCGAAGTAAGTAATTGAGAGTCAGTATACATACACAGTGGTCCTGCAGGAGACTGGGTTAAGGTACGACAGAAATAAATACTAGTTGGCTGTGATTGCACTTTACGGAAAGGCTGTCGTCAAAAGGATTGTGGAAATATTTCTTGGTCATAGAGGCCTTTACCCAAGAATGAATGCATAACAGAAAATCTTGTTTTGCTTTTGTGTGTGTCGGAGGATGGGGACTATTTTGATTGGAAATGGATTACCGTGACGATCATTATTCTAAATGGTTAACCAATTGAAAGGCAGTAAGCACAGATTTTATAGAACACTTTCTTCTGCAGTGTGTTGATTATGGGAAAGTTAGTGGATTTCAAAGGTTCTGATTATTAAAGTCGATCCTTAAAATGTGCTGACCTATTTCAGAGGGCAAAATTACCCTCAATATCTATACAACTATTCATAAATGATCATTTAAAAAAAGGTGAGTATATTGTATTTTTAAGGAGTAATTCGTAAGATTTACATTCTTGGTTACCTCATGGAACACTTGATAGCGATTTTTTGCCAGTTATTGAATAAGTTAATTCCTAAAGTAATCCACACACTGTGAAAGAAAGGGTATCCCTGATTTTAATGTATGTTTATGCAGATTTCTAGCAATAATATTTTGTCTTGGTTCTCCTGTGAGGGCAAAGTGAAGCATCATTTACTCAAAGTCAAAACGATGGTACTGCAGTATTAGGATACTACTCATCTTGTTTGGATTTTTTAACATTTTGTCTGTGAATATAAATTGTACATACGCTTcaaatgtattatatatatatataaatatatgctTTTGTAGGTCACATACTGTTTTTGCACAGATTGTCAGGCTAGATATTTAAAGTATAATTTTCTTATTATGTCGTAGGTCAAGACAGCTTTTATTTTCAATACTTTAACCATGGGCGAAAAGCAAGGGGCTATTTCTCTGATCAATACTGAAATACTTTGGCTCGATTTCTCTCAGAAAGCTACAACTGCCACTTTTGTTCTCTcagaaaacacttttttttatttgtgaTCTATAAATCATACATTTCTCTTTTTCAAAGACATTGTGTATATTTAGAGATGCTTGTGTGATCCTGTCTTTTTCTATTAAtagatttgttttgttttaagagcaatcaaacacacacaatgCCAGAAGAGGATTTATGTGATTGTGTTAGACTTATGAGGGTCCATGTTTCTTACCAGTGTGTGGATTGATATTTTTTAGATAGGGCCCTATGACTCCAATGGCTCTACTACTCAGGCTCCCAAGTGGCActgtggtctaagacactgcatctcagtgcaaaaggcATCACTGCaatacctggttcaaatccaggctgcatcacatccggttGTGATTGGGAGTTGGCCCAGCGTTTggcggggtaggccgtcattgtaaataagagtttttcttaactgacttaaaaggttaaataaaaaaataaaaatagttccATTCCTTATAATTCCATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCGTTACAATATCAAGACTGCTTCTCTAGTTTTCTCCCCTTCCGTTGGGCACAGATGCTGGTTTGTGGTGGTCGGTTTTTTACTGTATGTGGGCAGTAACACTGCGGTTAGTTATATTTGTGGCTTCGCTTTGTCAATAGGAAGAGTCAGCTCATGTTGAGGAAGGCTGTAAACTAGAGGGTTATTTggatttccctctctctctgtctggtttgAAGGTTATTTTGGGACATTTTACATGGTTTTATGTTGAACCTTGATATTGCATTTACATTGTAGTATTTTCTGTGAAGCTTTGTGAGAAAATCTTTTAAGACATGCTCAATCCAAagatttttgttttgtcattctgCAGTGCTTAGAAACCGGTTGTAGATGGTGCAAGTACTCTACTGGCGTGTGTATTTCTCTGCTGCACAACCTACATGTAATCtgtttttctttgtgtgtgtgtgtgtgtgtgtgtattcccatTCATACACCACATAGAGCTAACATGGGTCTGATTCTGCTGAAGTGATTTTAATCTTGTTTGTAATTGTTGTtttattttcttgattttttttatcTCTTATAATGTATGGCCAGTTCAAAGTTGTGGTGCGGGAAACAGTTGTTTCATGAGATTGACCACTCAGAAAAGAAGCTATTTTAGTGGCACTAACCTGAGGTAGAACGTCTGACGATAAGAGACTATCCCATGGACTCTAAAACTATTTACAATGGCTTCAATGCTATCTTATCTTTTAACACAACGGAGAGTATCTTTAAGCTGTTTGATGGAAACTTCATTACATCATGGAGTAGCCTagagtgattttttttttgtttcagtCTTGATGAAGTATATTAAAAAATATTTGCCTACTGAATATTCAAAATAACTGTTTTCCGTGCttttgcttaaaaaaaaaaagaagattccTCTTGATGTATCTACCCTTTGATTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912885 lncRNA upstream 3435 39228635 ~ 39229630 (+) False LOC110531165
TU912918 lncRNA upstream 16702 39215311 ~ 39216363 (+) True G802231
TU912909 lncRNA upstream 25281 39207537 ~ 39207784 (+) True G802222
TU912841 lncRNA upstream 135284 39097494 ~ 39097781 (+) True G802169
TU912830 lncRNA upstream 145225 39087611 ~ 39087840 (+) True G802158
TU912928 lncRNA downstream 21147 39258408 ~ 39259969 (+) True G802241
TU912985 lncRNA downstream 85355 39322616 ~ 39322837 (+) True G802292
TU912864 lncRNA downstream 88769 39326030 ~ 39330048 (+) False G802191
TU912866 lncRNA downstream 88769 39326030 ~ 39330048 (+) False G802191
TU912867 lncRNA downstream 88769 39326030 ~ 39384896 (+) False G802191
XM_021615603.2 mRNA upstream 160680 39064150 ~ 39072385 (+) False LOC110532019
XM_021615594.2 mRNA upstream 323347 38886624 ~ 38909718 (+) True LOC110532013
XM_021615595.2 mRNA upstream 348418 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA upstream 348418 38868277 ~ 38884647 (+) True LOC110532014
XM_036987920.1 mRNA upstream 1199842 38021682 ~ 38033223 (+) False LOC110532011
XM_036987944.1 mRNA downstream 2918 39240179 ~ 39256626 (+) True LOC110532020
XM_021615615.2 mRNA downstream 138107 39375368 ~ 39383225 (+) True LOC110532026
XM_021615616.2 mRNA downstream 163774 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 228670 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 263992 39501253 ~ 39503641 (+) False LOC110532032
TU912578 other upstream 160840 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 299197 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 444711 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1161632 38070216 ~ 38071433 (+) False G800834
TU910348 other upstream 1662654 37567245 ~ 37570411 (+) True G799858
TU913019 other downstream 178614 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 178614 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 178614 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 178614 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 178614 39415875 ~ 39417460 (+) True G802324

Expression Profile