RNA id: XM_021615610.2


Basic Information

Item Value
RNA id XM_021615610.2
length 1864
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110532024
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39325986 ~ 39334154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGTTCAGGCCTTGCCGTAGAATGTTGAGTAGTTCACTGGGCTTAAGAAAATGTGACTTGACCTGGCAACCCTGCTCGTGAAGGCTCTAGAAACGTCGAAGGCGCGGTAGCTGCGTCACAGCGTCAGGTCTGATTCGGAGTCCTCGAGGTGTAAGACAGGGTGGCCTTGCAGTGTGTAGAATACAATACACAGTTCTGTAGTTCGCGCACACTTTTCTACAGCCCATTGAAACGAAATCCCCACAAGGACAGTATTCTAAATTGAATTGTGTATCCCCAAGGAGACGGCGATCACAACGGCATTTGACATACAACAAGACATGCATCCAGCGACTGCTAAGTGGTATGACAGACGGGACTCTGTCTACATCGAGTTCTGCGTAGCGGACAGCAAGGATGTCAAGATCAATTTCGAGAAAGCAAAGTTTGCTTTCAGTTGTCTTGGAGGAACTGACCAAGTCAAACACGAGAATGAAGTAGACCTTTTCGAAGCCATTGATCAAAATgaatCCATGCACAAACGCACAGATCGGTCAGTGTTGTGCTGTTTGCGAAAAGCAGAACCTGGGAAGCCGTGGCCGAGGCTAACAAAAGAGAAGGCTAAGCTAACTTGGCTCAGCGTCGACTTTAACAACTGGAAAGACTGGGAGGACGATTCGGATGAGGAGCTAGGCAACTTCGATCGTTTCTCAGAGATGATGAACAACATGGGAGGGGAAGATGACCTACCTGATCTAGATGGTGCTGATGATGATGAGTCTGCAGATAGTGACGATGAAAaaATGCCTGATTTGGAATGAAAAAACTCAAACCTggaagagggatggaaggaagaaTCAAACTATCTTGAAATTGAAgactgggggaaaaaaatctgtACAGATATGAGTCGGTAGCCATGTTTAAATCCATAGCCTCTGCTCCAGAGCTAATTTCCAATCAGTCCACTTAAGGTTGATATGCATAGTGTTGTACAGAGTAGCAGTCTCCACTTCCATTTGCAGTGCTGCACTCTTGGCGTGTCCTGTTTTTACTATTATTAGATTAAGTATTCATGATTTGTTacggatgtactgtatagtcatCCTCAACCTAGAAAGCAATACATGTGAAGAGATTGTCAAGTGTAATGAAAAGTAATTAAACATCTCTTTTATCCTCCCCCACAAGGTTCTGTGTTAAGTTAGTTGAGCAGTGTACCAGAACAGTTGAACATTTTCTGTTTGGTTCCCACTTGTGAGCCTCCCTCCCCTGTGGCATATAGATAGTGATCAGAGAAACGGTTCCGTGTTTCAGTAGCTTAGCCTTTACGCTTACATGTTCCCTTTCTTCCTCACCTGTTATGTCGCAAACAGTTTATCAATGTTATGTTCATTTAGATTTGAAATGTTCTGGAATTCATTACAGGCATCTGACTTGATATGTTGCTCCCCACTTTTTGTTATTTGACTAATCCTGTATTACTATTTGCGATCCAACAGCAGTTGAGTTATTCATCACACATTTACGCAGGAATAGAGCATACACATTCCTATCTGTTTTAGGCCTTTGTAAACATCTGGATTTGTCTTGTACCCTAAAGAATATTCCATCTGTTTAGAGTTATGGCAGTTAAAATATCCCTTGTGTGGGGAGTGGGTTGTTGATATGAGATGGTAAACTTGTATAATGACCAAATTATATTTGCACTGTCAAGAAAATGTAAGTCTGGGGAGATGAATAGAAGCGTCGTTATTGGTGTGTATGTCAACTTGTCAGGTTATCACAGGCTGAAGAACTTAAATTGATGTTGAATTGcagtggattttttttattttttattgtctgTCTTTTTAATAAACTAAGACTCATGTTtcacacgg

Function

GO: NA

KEGG:

id description
K15730 PTGES3; cytosolic prostaglandin-E synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913284 lncRNA downstream 25353 39288021 ~ 39300633 (-) True G802564
TU913278 lncRNA downstream 77522 39247759 ~ 39248464 (-) True G802558
TU913270 lncRNA downstream 88582 39233311 ~ 39237404 (-) False G802551
TU913271 lncRNA downstream 88582 39233311 ~ 39237404 (-) True G802551
TU913179 lncRNA downstream 187001 39135095 ~ 39138985 (-) True G802465
TU913326 lncRNA upstream 61342 39395496 ~ 39395769 (-) True G802606
TU913351 lncRNA upstream 147374 39481528 ~ 39542652 (-) False G802623
TU913355 lncRNA upstream 171249 39505403 ~ 39542652 (-) False G802623
TU913408 lncRNA upstream 171653 39505807 ~ 39507225 (-) True G802672
TU913353 lncRNA upstream 197512 39531666 ~ 39542652 (-) False G802623
XM_036987945.1 mRNA downstream 10427 39272822 ~ 39315559 (-) True baz2a
XM_036989282.1 mRNA downstream 55171 39267325 ~ 39270815 (-) True LOC110532022
XM_021615605.2 mRNA downstream 64153 39258488 ~ 39261833 (-) True LOC110532021
XM_036987938.1 mRNA downstream 306525 38996511 ~ 39019461 (-) True LOC110532017
XM_021615602.2 mRNA downstream 306997 38996511 ~ 39018989 (-) False LOC110532017
XM_021615612.2 mRNA upstream 3752 39337906 ~ 39354045 (-) False LOC110532025
XM_021615613.2 mRNA upstream 3752 39337906 ~ 39354045 (-) False LOC110532025
XM_036987947.1 mRNA upstream 3752 39337906 ~ 39354045 (-) True LOC110532025
XR_005053499.1 mRNA upstream 3937 39338091 ~ 39338164 (-) True LOC118966240
XR_005053501.1 mRNA upstream 4701 39338855 ~ 39338928 (-) True LOC118966242
TU912821 other downstream 251266 39074481 ~ 39074720 (-) True G802149
TU912807 other downstream 264605 39050530 ~ 39061381 (-) True G802138
TU912768 other downstream 329954 38966456 ~ 38996032 (-) True G802100
TU912701 other downstream 484474 38841209 ~ 38841512 (-) True LOC110532015
TU910862 other downstream 1980839 37344395 ~ 37345147 (-) True G800318
TU913322 other upstream 46596 39380750 ~ 39383210 (-) True G802602
TU913332 other upstream 77188 39411342 ~ 39414326 (-) False G802609
TU913331 other upstream 77286 39411440 ~ 39414326 (-) True G802609
TU913974 other upstream 609926 39944080 ~ 39949140 (-) True G803170
TU914000 other upstream 627313 39961467 ~ 39962981 (-) False LOC110531168

Expression Profile