RNA id: XM_021615615.2


Basic Information

Item Value
RNA id XM_021615615.2
length 3096
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110532026
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39375368 ~ 39383225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGCAGTGTCATAACTCGGCGCATACCGCTGGCAGCAAGCTCCATCGAAGGTGTACTTACTGTACAGCATCCCGGCGGAATGCACTGATAACTCACAGAGGATTTACACGTGTTTTTATTTCGCATATCAATTTATTGTGTTCGTCAACCAAATCGTATTCACAATGAAGGAAAGGAGACTTACCCAGCCTCTGGTGGCGAGATGTAAACTGGTGTTGGTTGGGGATGTTCAATGCGGAAAAACGGCGATGTTGCAAGTCCTTGCCAAGGATTCCTATCCTGAGACCTATGTTCCAACAGTATTTGAGAACTACACAGCGTGTCTGGAGCTGGAGGAGCAGCGCGTAGAGCTCAGTCTCTGGGACACGTCAGGCTCTCCGTACTACGATAACGTCAGACCCCTGTGCTACAGCGACTCAGACGCTGTGCTCCTCTGTTTCGACATCAGCCGCCCAGACTCATTTGACGGTGCACTGAAAAAGTGGAAGACAGAGATCCTGGATTTCTGCCCCAGCACACGCATCCTCCTGATAGGCTGTAAAACAGACCTGCGCATGGACGTGTGCACGCTTATGGAGCTGTCCAATCAGAAGCAGACACCCATCTCACATGAGCAAGGGTCCTCCATGGCCAAGCAACTAGGTGCGGAGGCCTACCTGGAGTGTTCAGCCTTCACCTCAGAGAAGAGCATCCACAGTGTGTTCCGTACTGCAGCCCTGGCCTGCATCAACAagctgcagccctccaccaagcCCAGCCCCGCCCGACGCCTCTCCAAGAGACTCCTCTTTCTGCCCGGCAAGtctgacctcctctcctccaccttcgGCAAGGACAAGGCCAAGGGCTGCTCCATCATGTGAGGGAAGGGAGTAGAACCCAGACAGTGGTGGTCAGAGAGGCACTCCATTGACCGGTCCAGCTGATAAAGGGGGgtgtggggtggggaagggaagggaaagtaAGAGGGAAGGAAGGGGTTTCTGTTTAATCCCTCTGGCCTCCCCAAACATCCTCCCCACCCCCACTGACGGCCCCCTTTAAAAAAGAATGCTACCCCTCCATGGTTTACTCTGTGTAGTCTATACTGGTCTTCTTCATGACCCCCCCATCCCCCAAAAACACATACACAacagacccacacagacacacacctcaccagCATACTGTAGGTTAGTGCAGACTTCCTTTTATAATGCCAGTGAGAGCGAAATGATATAAGAAAACAACATCAATTGTAAACACAGCATCTCACCTCTTTGTAATGTTGATGTGTGTACCATCCATCATCCTTGCCCTAAATTAAACTTGAAAATGTTAACGTTAAAATGGGGAtctttgctaaaaaaaaaaggaTGAGGTGGCCAACCTCTACCTTCCTGGCAATGAGAGGGAACGGTACCCAGAGTACCCAGTGTGACGCAACTGGGGAGGTTTGAGAGAGTGGGCCTTAAATGAAATTATTTCCATGGCGACCcctacagtattttttttttaggaCATTAAATCTGTCAGCAATGAAACAGGGTCTGGAGGAGGGATATGGCAAGCACACCGCTCTTAAAAGAGGTCGTGGGGAGGATAGACTGAGCGAGTCTGAAGGAGTGCTATGTGACTAAACATTCACACGGGCCATTAACAGTAAGACTGGGGACATGCTGTGCTGAGAGCAGAAGAAAAAGAactgaggatgagagagagacttgtttttTTTTCCTCCTTTAGTCAGCCACTCTCTTCTTCATCTCAAGGTGTTTAACTTCAGACGTTGATGGAGTGGGGTGATATTTATAAGGCCACTTTTACTGTCCAACAGTCTTTGATATTTGATTTAACAGAAGGAGAAGAGTCCCCCCTGGTTCCTCTAAGCCTCATTTGGATCATTCTTAAATCCTCTGACCTTGTGTTTACGTAACACATAAAAGGTCAATAATTCTTCACTATGAGCTTTTAACCGTAGCATTGAAGGAGTCAGGAGCTCACTCACTACGCCTCGAGAAGCTTACCGGTGGCAGGGATAAGCTGATCATGTCATTGTCAACACTGGGTTGAAAGAGAAGTCTCCTTGCTCCACGATTGGTCACCTGAGATGAGACTCTCTGGAGTCGTCATTCTTGTAGTGTGGCTAGTCATGATAGTACAGGATCAGAGCCTTTACAAAGCTGGGTATCTCATTCATACTGTGTGAAGAAGAGCTTAAGAAATGTAGATGGGGTAAAGGGTCCTGGGTGTGGTAAGGGGTGTGGGTGGGATGGGTTGGGTTGTGCCGAAACAGAACTAACAGGCTGGTCCTGTCTGAAGAAAGTtatttttccatttttgttctgCTTTGTATTCAAATCTTTTAAGTATAagttaatttcattttttttgttttcttctaaTTTGAAATCTGCTTTCTGCCCAGTCCTTTTTTAACTGTTTATTGTTCTctgctgtttttgttgttgttgtgcttaCTGACGTCATCTTGTATTAGGAGCTGTCTACGGCTCAGCTAACGGAGGACTTCATGATTTGTTTGGACATATAGAACACTGGAATTTAACATGTTGCTTAGCAACAGTGCGAGCAGGGGCAGGCGTGAGCAGGGGCAGGCGTGAGCAGGGCTGCGGTGACTGGGATGCAGTTCCTGTCTCTGGGAGAAAAGAAAGATGTCTTGTCAACTGGGCTCCTCACCATTACTTTGTAGCACCAGACAGAGACCACTACTAAGGTGACGGCTGGACATTTCAGTAAGTAGAACACTGCTGAAAAATATCTGAAAAAGCTCATTTGAAGCCTCCAGCTCAGTGGCAGGTGTAAGAACAACACAGGGATTTTCAAAAAGCAATGTGAGTACCTTTCCAAACTGAGTTCCAACCAAAACACTATTTTTTTTTAGCAGTGAGTGACGAAGCATGTTGTTGAAACGAAACAAAGCGTTTGGGATATGTAAAATGGCTTGACCTTTGTTTATTAATGAGATACTGTATTGCTCAATGTTGTCATTTTTATCTTTTGACATTTTTAATTTGAACGGACACTGAGATTTCGGTCCGCCCGTTTTCTGTCGGGATCTGAATAAAGTTTGCTTTTGTTCATCATACTCTCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912875 lncRNA upstream 36174 39337906 ~ 39339194 (+) False G802195
TU912877 lncRNA upstream 36836 39337906 ~ 39338532 (+) True G802195
TU912865 lncRNA upstream 41318 39327755 ~ 39334050 (+) True G802191
TU912864 lncRNA upstream 45320 39326030 ~ 39330048 (+) False G802191
TU912866 lncRNA upstream 45320 39326030 ~ 39330048 (+) False G802191
TU913006 lncRNA downstream 7073 39390298 ~ 39390539 (+) True G802313
TU913010 lncRNA downstream 14653 39397878 ~ 39398093 (+) True G802317
TU913028 lncRNA downstream 31500 39414725 ~ 39415149 (+) False G802325
TU913026 lncRNA downstream 32174 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA downstream 32174 39415399 ~ 39415647 (+) True G802325
XM_036987944.1 mRNA upstream 118742 39240179 ~ 39256626 (+) True LOC110532020
XM_036987940.1 mRNA upstream 137960 39111355 ~ 39237408 (+) False LOC110531165
XM_036987942.1 mRNA upstream 137960 39111358 ~ 39237408 (+) False LOC110531165
XM_036987943.1 mRNA upstream 137960 39111363 ~ 39237408 (+) False LOC110531165
XM_036987941.1 mRNA upstream 137960 39168033 ~ 39237408 (+) False LOC110531165
XM_021615616.2 mRNA downstream 17810 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 82706 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 118028 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 148234 39531459 ~ 39542666 (+) False g6pd
XM_021615621.2 mRNA downstream 148261 39531486 ~ 39542666 (+) False g6pd
TU912870 other upstream 138107 39233065 ~ 39237261 (+) True LOC110531165
TU912578 other upstream 303143 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 441500 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 587014 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1303935 38070216 ~ 38071433 (+) False G800834
TU913019 other downstream 32650 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 32650 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 32650 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 32650 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 32650 39415875 ~ 39417460 (+) True G802324

Expression Profile