RNA id: XM_021615622.2


Basic Information

Item Value
RNA id XM_021615622.2
length 3219
RNA type mRNA
GC content 0.49
exon number 14
gene id g6pd
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39531459 ~ 39542666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAATTCCGTTGTGTCATTTTAACAGGGAAGAAGGAAACTGCGATCGAGATGCACTGCAAGTAGCCTGGTGATTTACAGAAGTGTCGGTTGGGGTTTGCGCTGTAATCGCCACATTCTCAGTTAAAGTGAATCGTTTGAATTGGAAATGGCTGGAAAGAGACCCGCCGGTGGTGCCATTGCACAACAAGGACCTGGAAAAATGagctccattcccctctctcggTCCGAGGTGTTTGGAGAGCTGCGGAAGGAGCTGCATGAGGATGAGGAGTTCCGTCAGTCCGACGCTCACATCTTCATCATCATGGGAGCATCGGGGGATCTAGCCAAAAAGAAAATCTACCCAACTCTATGGTGGTTGTTTAGAGATGGGCTCCTTCCTGAACAGACTCACTTTGTGGGCTTTGCCCGCTCTGACCTCACAGTGGATGCCATCAAAACTGCCTGCATGCCCTATCTGAAGGTGGCAGACTCTGAGGCTGAGCGGTTGTCTGTGTTCTTCAGCCGTAACTCTTATGTCAGTGGGAAGTACGCGGATGAGAGTGCCTTCTCCAACCTCCACACCCACCTGCTGTCCCTGCCCGGGGGTGGTGAGGCCAACCGCCTCTTCTACCTGGCCCTGCCGCCCAGCATCTACCACGATGTCACCAAGAACATTAAGCACCACTGCATGAGCACCAAtaggGGCTGGAACAGGGTGATTGTGGAGAAGCCGTTTGGTCGTGACCTGCAGAGCTCTGAGGAGCTGTccacccacctctcctccctgtTTACTGAGGATCAGATCTACCGCATAGACCACTACCTGGGCAAGGAGATGGTGCAGAACCTCATGGTCCTCAGGTTTGGGAACCGGATCTTTGGGCCCATCTGGAACAGGGACAGCATAGCGTGTGTGGTCCTCACCTTCAAAGAACCCTTCGGCACCCAGGGCCGAGGCGGCTACTTTGATGACTTTGGCATTATCCGTGATGTCATGCAGAACCACTTGCTCCAGATGCTCTCTCTGGTTGCCATGGAGAAGCCGGCCTCCACCAGCTCTGATGATGTCAGGGATGAAAAGGTGAAGGTGCTGAAGTGCATCGCCCCCATTACCATGTCAGATGTGGTGTTGGGGCAGTACGTGGGCGAcccagagggagaaggggacgcCAAGCTGGGTTACCTTGATGACCCCACTGTCCCCAAAGGCTCCACCCAGGCCACCTTTGCCACAGCTGTGCTCTACGTGCACAACGAGCGCTGGGATGGTGTTCCCTTCATCCTGCGTTGCGGCAAAGCCCTGAATGAGCGGAAAGCAGAGGTCCGGTTGCAGTTCACCGACGTCCCGGGGGACATCTTTGGCGCGCAGTGTCGTAGGAATGAGCTGGTGGTGCGCGTGCAGCCCAACGAGGCCGTCTACGCCAAGATGATGAGCAAGAAACCAGGAGTGTACTTCCACCCCGAGGAGACGGAGCTAGACCTCACCTACAAGAGCAGATACAAGGATGTGAAGTTGCCAGACGCCTACGAGCGTCTCATCCTGGACGTCTTCTGTGGCAGCCAGATGCACTTTGTCAGAAGTGATGAGCTGAGGGAAGCCTGGAGGATCTTTACGCCTCTCCTTCATCAGATAGAGAATGAGAAGATTCCCCCCACACCCTACAAATATGGAAGCCGGGGTCCAACGGAAGCGGACGAGCTCTCAAAGAGGGTCGGTTTCCGATACGAAGGAACATACAAATGGGTCAACCCCCACCgactgtgagagacggagaggaagagggatgggtagagaaaGGAGGCAGGGTGGGGTAAATGAGTAGCGTTACGTTGCAATATGTTTGAATGTCTTCTTTGGGTCTGGTGGCTTCTACTATTGCTCTTTCCTTTCCAGACCTGTCACGGCAACCGCCAAGAAAGACTAGGAAATATGGAAAGGAAGCTATTTAATAGTATTGGAGCATAGCCTAGGTCTCAGGTACTACATTAATGCTCTGGTGTCACTTGTATCTGTCAGGTcttaactagggagggaggaggtgtctAACCACTGGGGAGCAAGGGAAGAGCGAGCGAACACTAGCCCAATTCTGTTTCAATTCTGAACACTAGCCCAAATCCATCTCATCATGGATTCAGAAGCTGTGGTTGCGATCCGATTCTCTACCCTTCACCCAGGAGTGTGCACTTACTTCCAACATACTCATCACACCAGTCTATCCCATAAGGGGGGGGTACAAGTGCAAACTTCGGACTGGGAGAGTGGTAGAGAATAGGACTGATTCCCTTGAATGGGTGGGCTGGAGAGGTTTCCACTTTCTTCAGTACACACTTCAGGCagaagggagagaaacagaattAGGCTACTCTTAGACAAAACATTCTACAGCTCTGTGATCAGCTAGTGATCATAGCTACCAAAAGTTAGACCTGGGTGTTTTTACATGGAGACTGAGAACAAAACATGGATTAACCTGTTTTAATGGTGGGAATTACAATGAATGTCTACTATCCTCTGCTATTATCACCTGTATTAAAGGGGTACTttgagattttggcaatgaggccaaAACTTGTGGATATGGTTATGTCTGTgttcagtatgaaggaagttagaggtagacaagcatatgctaccaCCAGGATCAACCAGGTATCTGCTATTATGCTAGTAGATACTTATAGACTTTGTCATTGCGCTAACGTTAGTTAACATTTGCTTGCCCGACTACCTCCAacgtccttcatactggacagacacacatggTAGCCATGAGTCCATCTGACTCTGggtgcctcattgccaaaatcccaaagtatccctttaacagaTTAAGGTTTTTTCTATTAATGTAATCTTTTTGTTTTTcttatgctattttggaccaaGCAAAATCATGATTGCATAATAATTGTGTTGAAGTGGGTTTAAAGCATGGTGGTTGAATGCAGGGGTCAATATTTTCTGCAGGCAGTTTCCTCTCCAATTTCTTACAAAGCTAAATTGTACAAGAACAAGGCTTTAGTGTGCTTAATTCCAAGAAAAGAGCTGTGACTTTCATTCCTTTTTGTTTACATTTTCAGGCCTATTAAGTTACTGATGTTTGTTTAGAAACAAAGTCTGTCACAGGGTCAACATATGATGCCATCTTTATAATGACGTACTTTATTGCTATAGACCGAACATTCATGTTATATTTCCAAAATTGCAATAAACCAGTAATTTCTTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913037 lncRNA upstream 15594 39436366 ~ 39516038 (+) True G802328
TU913040 lncRNA upstream 28063 39502500 ~ 39503569 (+) True LOC110532032
TU913063 lncRNA upstream 62200 39447083 ~ 39469432 (+) True G802353
TU913026 lncRNA upstream 115914 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA upstream 115985 39415399 ~ 39415647 (+) True G802325
TU913103 lncRNA downstream 11521 39554187 ~ 39556665 (+) True G802392
TU913111 lncRNA downstream 15599 39558265 ~ 39562731 (+) True G802399
TU913503 lncRNA downstream 132347 39675013 ~ 39675349 (+) True G802764
TU913519 lncRNA downstream 173767 39716433 ~ 39716670 (+) True G802778
TU913552 lncRNA downstream 232801 39775467 ~ 39775699 (+) True G802811
XM_021615618.2 mRNA upstream 17753 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA upstream 27991 39501253 ~ 39503641 (+) False LOC110532032
XM_021615616.2 mRNA upstream 120433 39401035 ~ 39411199 (+) True ddx23
XM_021615615.2 mRNA upstream 148407 39375368 ~ 39383225 (+) True LOC110532026
XM_036987944.1 mRNA upstream 275006 39240179 ~ 39256626 (+) True LOC110532020
XM_021615634.2 mRNA downstream 96575 39639241 ~ 39640889 (+) False spryd4
XM_021615630.2 mRNA downstream 143162 39685828 ~ 39715886 (+) False LOC110532038
XM_021615631.2 mRNA downstream 143162 39685828 ~ 39715886 (+) True LOC110532038
XM_021615635.2 mRNA downstream 188282 39730948 ~ 39747079 (+) True map3k12
XM_021615647.2 mRNA downstream 307085 39849751 ~ 39855939 (+) False stac3
TU913038 other upstream 58075 39465973 ~ 39473557 (+) True adcy6a
TU913020 other upstream 114172 39415875 ~ 39417460 (+) False G802324
TU913483 other downstream 96588 39639254 ~ 39640869 (+) True spryd4
TU913562 other downstream 246991 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 249251 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 267661 39810327 ~ 39812025 (+) False G802830
TU913578 other downstream 267661 39810327 ~ 39812025 (+) True G802830

Expression Profile