RNA id: TU913483


Basic Information

Item Value
RNA id TU913483
length 1351
RNA type TUCP
GC content 0.49
exon number 2
gene id spryd4
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39639241 ~ 39640889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGATGGCGATGCCCCTTGGCTTGGGACAATATTGTAGCTTGGCAGGACGAGTTATGGGCGCATTGTCCCGCAGACAAACACGTGGGACACTTCTTCCAGCGATAAGATGGTATATTACCCAAACGGCAGGCAATAGTGAGTAGAAATTTGAACTGCGTGTGGACACTGAGTGAGGCGCCCTTTGCCTTAGTTTCAGCTCATAGCAAACTAGAGGTCAGAGCAGGGGAGATTGCATAATAAGAATTCTGACCGCGCTCGTGACCAGCTGCTTGTGTTGTAAATCTTAACGTACGTGCAGTTTAAGCTGGACGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGTGTCATCTATCGCATCCTGGGCCTAGACCCCAGCCATGTCCAACAGAACCCTGAGCGTTTCCGTGATTGGGCCGTGGTGTTCGGAGACGGGCAAATCACAGGCGGCCGCCACTACTGGGAGGTGACAGTGAAGAAGTCGTCAGAGTTCCGTTTAGGCGTGGCCGAGGCGGCGATGTCACGGGACGACTGCGTAGGCACCAACCGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGCAAGTGGTTCGCCATGACAACCAACCAGAGGGTGCCGGTGCCTCTGGTGGGTAAGCCTGATCGGGTGGGCATCCTGTTAGACTATGAGGCCGGCCTTATAGGCCTGGTGGATATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGTCACGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGAGGAGCCTGAAGGCTTGAAGTGAAGCAGAAGGATCTCTGGACTCTGGTGACAATATGTCAGGCAGGTGGATGGCTTTGATGGCAAGGCCAGAGGGGGCCAGGAGCGGCGATGTGCATTAATTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAATATGTCTTTCAAATCTCCCATGAAGAGCAATATTCTCCATCCGAATGTAAAGCTTGAAGTTTATTTTCAATGGGGGAAGCAAGGAGTTGATCCAATCTGTAATTTCACTGCCATACAGACCAGGCATAATAAATTGTGTTTTTGTTACCTCTCgtgttcttttttttatttttatgtgaaATAAAATGGCAACAATATGTAGCCATCCTGTGTCTAACAAGAGATCATTAAGTGCTGGGAATgttgctgctattactattgctTAATGTCTTGACATCCTCCACCACCTTGTCAAACTTGGAATTAAACCAAAAACATGCATTTTTTGAACCTTTTGATATAATCCAATTGTGTGCTGAGATTGTATgctgaaataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913111 lncRNA upstream 76523 39558265 ~ 39562731 (+) True G802399
TU913103 lncRNA upstream 82589 39554187 ~ 39556665 (+) True G802392
TU913037 lncRNA upstream 123216 39436366 ~ 39516038 (+) True G802328
TU913040 lncRNA upstream 135685 39502500 ~ 39503569 (+) True LOC110532032
TU913063 lncRNA upstream 169822 39447083 ~ 39469432 (+) True G802353
TU913503 lncRNA downstream 34144 39675013 ~ 39675349 (+) True G802764
TU913519 lncRNA downstream 75564 39716433 ~ 39716670 (+) True G802778
TU913552 lncRNA downstream 134598 39775467 ~ 39775699 (+) True G802811
TU913561 lncRNA downstream 147027 39787896 ~ 39788238 (+) True G802820
TU913580 lncRNA downstream 173306 39814175 ~ 39817115 (+) True G802831
XM_021615623.2 mRNA upstream 96588 39531459 ~ 39542666 (+) False g6pd
XM_021615621.2 mRNA upstream 96588 39531486 ~ 39542666 (+) False g6pd
XM_021615620.2 mRNA upstream 96588 39531488 ~ 39542666 (+) False g6pd
XM_021615624.2 mRNA upstream 96588 39531582 ~ 39542666 (+) False g6pd
XM_021615622.2 mRNA upstream 96588 39531632 ~ 39542666 (+) False g6pd
XM_021615630.2 mRNA downstream 44959 39685828 ~ 39715886 (+) False LOC110532038
XM_021615631.2 mRNA downstream 44959 39685828 ~ 39715886 (+) True LOC110532038
XM_021615635.2 mRNA downstream 90079 39730948 ~ 39747079 (+) True map3k12
XM_021615647.2 mRNA downstream 208882 39849751 ~ 39855939 (+) False stac3
XR_005053243.1 mRNA downstream 208882 39849751 ~ 39855939 (+) False stac3
TU913038 other upstream 165697 39465973 ~ 39473557 (+) True adcy6a
TU913019 other upstream 221794 39415875 ~ 39417460 (+) False G802324
TU913562 other downstream 148788 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 151048 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 169458 39810327 ~ 39812025 (+) False G802830
TU913578 other downstream 169458 39810327 ~ 39812025 (+) True G802830
TU914248 other downstream 745896 40386765 ~ 40389052 (+) True LOC110532068

Expression Profile