RNA id: XM_021615630.2


Basic Information

Item Value
RNA id XM_021615630.2
length 6364
RNA type mRNA
GC content 0.57
exon number 54
gene id LOC110532038
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39685828 ~ 39715886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGTACTGTGGACATAAAACCGCGGTTCTTGCTCTGACGCGGTGGGTGTAAAGTGCCGGCTAGGGCCCCGCGTTGGATTCCACTTCGATTTTGGAAGGTTGACTGCATGGTTCGGTTGTAGTCTCtgggaacacacaaacacactccattAAAAGAGAGCATCGTCTGATCCGTCCCATCTTTTTCTTCACCCAAGGTCCTGCATGTCTAAAATTTAGACATGTTCAGCTTTGTGGATTCACGGACTGTTCTGCTACTTGTAGCATCCCAAGTTGTTTTAATATCCATTGTCAGATGCCAGGAAGAGGATGACCAGGAGGCAGGCAGCTGCATCCAGGATGCCCAACGCTATAACGATAAGGATGTGTGGAAGCCGGAGCCGTGTcgtatctgtgtgtgtgacagcggGTCAGTGCTGTGTGATGAGATCATCTGCGAGGAGATCAGAGAGTGTGCCAACCCCATCATCCAACCTAGAGAGTGCTGCCCCATCTGCCCTGCGGACGCCAGAGCCCCAACTGAGGCGGTGATTGGTGCTAAGGGCCAGAAAGGGGAACCAGGCGAGATTGCAGATGTTGTAGGACCGAATGGACCAGCAGGCCCTATGGGCCCCTCGGGCGAGCAGGGACCACGTGGAGAAGCTGGCGCTAAGGGTGATAAGGGAAATGTTGGCCCCAGAGGCAGAGATGGCGAGCCTGGAACCCCCGGGAACCCCGGACCCCCTGGCCCTCCCGGACCCAACGGACCCCCAGGTCTTGGCGGGAACTTCGCGGCTCAGATGGCTGGTGGATTCGATGAGAAAGCCGGAGGCGCACAGATGGGAGTGATGCAAGGACCTATGggcCCTATGGGTCCCCGTGGTCCACCTGGCCCTTCTGGAGCCCCTGGCCCACAAGGTTTCCAAGGTAACCCCGGAGAGACTGGAGAGCCAGGCCCTGCTGGTGCACTGGGACCCCAAGGACCCCCTGGACCTTCTGGCAAACCAGGAAGTGATGGTGAGGCTGGCAAACCTGGAAAGGCTGGTGAACGTGGACCTGCAGGACCTCAGGGAGCTCGTGGATTCCCCGGGACTCCTGGTCTTCCCGGAATCAAAGGACACAGAGGTCATCCTGGTCTTGATGGATCTAAGGGAGAGGGTGGTGCTGCTGGAGCCAAGGGCGAGGGTGGCGCTCCCGGAGAGAACGGCGCCCCTGGACCAATGGGACCACGTGGTCTGCCTGGCGAGAGAGGCCGTCCCGGAGCTTCTGGCTCTGCTGGTGCCCGTGGTAACGATGGCTTGCCTGGCCCTGCTGGTCCCCCTGGGCCTGTTGGACCTGCTGGAGCACCTGGTTTCCCTGGATCCCCTGGCTCCAAGGGAGAAGCTGGCCCCACTGGTGCCCGTGGAGCTGAGGGCGCACAGGGACCCCGCGGAGAGGCTGGCACACCCGGATCTCCCGGTCCCGCTGGCGCCTCTGGCAACCCTGGTACTGATGGTATCCCCGGAGCTAAAGGATCTGCTGGTGCTTCTGGTATTGCTGGTGCACCTGGTTTCCCAGGACCCCGTGGCCCCCCCGGACCTCAGGGAGCAACAGGACCTCTTGGGCCCAAGGGCCAGTCGGGAGACCCCGGTATTCCTGGTTTCAAAGGAGAGGCTGGACCCAAGGGAGAGCTTGGCCCTATTGGTCCCCAAGGCGGCCCTGGCCCCGCTGGCGAGGAGGGAAAACGAGGAGCAAGAGGAGAGCCCGGTGCTGCTGGACCACTTGGACCTCCTGGCGAGAGAGGAGCTCCCGGTAACCGTGGTTTCCCGGGTCAGGACGGTCTTGCTGGTGCTAAGggAGCCCCTGGTGACCGTGGTGTTCCCGGCGTGGGTGGGCCTAAGGGAGGCACTGGTGACCCCGGCCGCGCAGGAGAGCCTGGTCTTCCCGGAGCCAGAGGTCTCACTGGTCGCCCCGGAGATGCTGGTCCTCAAGGCAAAGTTGGCCCTGGTGGTGCTGCTGGTGAGGACGGTCGCCCCGGCCCACCTGGTCCTCAGGGAGCACGTGGCCAGCCTGGTGTGATGGGATTCCCCGGACCAAAGGGAGCCAATGGTGTGCCTGGCAAGGCAGGAGAGAAGGGTCTCGTGGGTCGTCAAGGTCTGATAgGTCTGTCTGGTAAAGATGGTGAGACTGGCGCTGCTGGACCTAACGGCCCTGCTGGAcctgctggagagagaggagagcagggagctGCTGGGCCATCTGGCTTCCAGGGTCTGCCTGGACCTGCTGGCCCCCCGGGAGAGGGAGGCAAGCCTGGTGATGCGggtgTTCCTGGAGAGGCTGGTGCTGCAGGCGTTACGGGACCCAGAGGCGAGCGTGGTTTCCCTGGTGAGAGGGGCGGCGGAGGATCTCAGGGTCTGCAGGGACCTCGTGGACTTCCTGGAACTCCCGGAACCGATGGACCCAAGGGAGCCATTGGGCCAACTGGTGGTGCTGGATCTCAGGGACCCCCCGGCCTGCAGGgtatgccaggagagagaggagctggtgGTATCCTTGGAGCCAAAGGTGACAGAGGTGACAACGGCGAGAAAGGACCTGAGGGCGCTCCTGGAAAGGATGGTTCCAGAGGCTTGTCTGGTCCCATTGGTCCTCCTGGCCCAGCTGGTCCCAACGGCGTGAAGggTGAGGGTGGACCTTCTGGCCCAACTGGTGCGGCTGGTGCCCGTGGTGCTCCTGGTGACCGTGGTGAGGGTGGTCCTCCTGGGCCTGCTGGCTTCGCTGGGCCTCCTGGTGCAGATGGTCAGCCTGGAGCCAAGGGAGAGTTTGGCGAGGCTGGACAGAAGGGAGATGGTGGTGCCCCTGGACCTCAGGGACCCTCTGGGGCCCCTGGACCTGTGGGTCCCACTGGTGTTTCTGGATCTAAAGGAGGCCGCGGTGCCCAGGGTGGCGCTGGTGCTACTGGTTTCCCTGGTGCTGCTGGAAGAGTTGGATCTCCCGGTCCCAATGGTAACCCTGGTGCTGCTGGCCCCGCTGGTCCTGCTGGTAAAGATGGTCCTAAGGGAGTTCGCGGTGACGCTGGCACCCCAGGAAGACAGGGAGATGCCGGGCTGCGTGGAGTTGCTGGAGCCCCTGGCGAGAAGGGAGATGCTGGAGAAGACGGCCCCCCTGGCCCTGATGGTCCTTCAGGTCCCCATGGTCTGGCTGGGTCTCGTGGTATTGTTGGTCTGCCTGGGCAGCGTGGAGAGAGGGGCTTCCCTGGTCTTCCTGGACCGTCTGGAGAGCCCGGTAAGCAGGGAGCTTCTGGTGCTGGTGGTGACCGTGGACCGCCTGGCCCTGTGGGACCCCCTGGACTGTCTGGACCTGCAGGAGAGCCCGGAAGAGAGGGCAATGCTGGATCTGATGGACCCCCTGGTAGAGATGGATCCACTGGAGTCAAGGGTGAGCGTGGTAACACTGGTCCTGCTGGTGCTCCTGGTGCCCCGGGCGCTCCCGGTGCCCCCGGCCCTGTCGGCCCCCTGGGCaagcagggagacagaggagagggaGGTGCCCAAGGACCTGCCGGACCCGCTGGACCAGCTGGCGCTAGAGGAATGGCTGGACCCCAAGGACCCCGTGGAGACAAGGGAGAGGCTggcgagacaggagagaggggacagaaggGACACCGTGGCTTCACTGGTCTGCAGGGTCTTCCCGGACCTCCCGGCTCCGCTGGAGACCAGGGAGCTGCTGGACCTGCCGGACCTAGTGGCGCTAAAggaccccctgGCCCAGCCGGTCCCGCTGGTAAGGATGGATCAAACGGTACCCCTGGACCCCTCGGACCCTCTGGGCCTCGTGGTCGTTCTGGAGAGACTGGTGCTGCTggTCCTCCTGGTAACCCCGGACCTCCTGGTCCTCCTGGTCCTCCCGGCCCTGGCATCGACATGTCTGCCTTCGCTGGCCTGTCTCAGCCAGAGAAGTCTCCGGATCCCCTGAGGTACATGAGGGCTGATGAGGCATCCAGCTCCCTGAGGCAGCACGACGTGGAGGTGGACTCCACACTCAAGTCCCTCAACTACCAGATCGAGAACCTGCGCAGCCCCGACGGTAGCCAGAAGAACCCCGCCCGCACCTGCAGAGACATCAAACTGTCCCACCCCGAATGGAAGAGTGGTGACTACTGGGTGGACCCGAACATTGGCAGCACAGCTGACGCCATCAAGGTCTTCTGCAACATGGAGACCGGCGAGACCTGCGTGTACCCCAGCATAGCCAACGTGCCGCACAAGAACTGGTGGACAAGCAAGAGCAAGGACCGCAAACACGTCTGGTTCGGAGAGACCATGAATGGAGGATTCCACTTCAGCTACGCTGAGGACGGTACCAACGCCGCCAGTATCCAGCTGACCTTCCTGAGGCTGCTGTCCACGGAAGCGTCTCAGAGCCTCACCTACCACTGCAAGAACAGCGTGGCCTATATGGACGCATCCACGGGCAACCTGAAGAAGGCTCTGCTGCTCCAGGGCTCCAACGACGTGGAGATCCGAGCTGAGGGCAACAGCCGCTTCACCTACAGCGTGGCGGAGGACGGCTGCAAGaaacacacaggccAGTGGGGCAAGACTGTCTTCGAGTACAAAACACAGAAGACCTCCCGTCTGCCCATCGTGGACATTGCTCCCATGGACATCGGAGGAGCGGACCAGGAGTTCGGCGTGGACGTGGGCGCAGTCTGCTTCTTGTAAAAGTGGGACAAACGAGAcgagaaaaaaaactaaaacatgaAAGAAATAACTATGAAACAATACACGATCCAAAAAAAGAAGACcggaactaaaaaaaaaaaaatgataattgATATTCTCTCTTACAAAGAAGTGCTCTCCAAGTTGTACACCCTGGATGTTAGCACTGAAAGACACCAGCAATATCCGTACGTAATTCCAGCATTCCCCAGTCGTGTTTCCTGTGGCCCACAGTCGGTGGGAATGAGTTTGAGCCAGAAGGAAAAGGGACCAAGCCAAGGGACGAGTGATGGAGAAACAGAAACATGACTCGATGTCACTTATTTATTGTCTAAACTTTAAAGGGGCATAGATGAGGTACAgtgggactggggggggggggggggggcttaaccATAAGAACAGCACAAGCTCCTCCCACTACAGAACACCTAGAACCTcccactccacctccctctccgACCTAGCTACAAATACGCCATTTTGAATCAATGTAGACCAAAAAATATTTTCAGTAATTATAAGGTGCTTCAAAATGTGCTTTTTTAACCATCAAGACCAGGAGCTAAACTTTTACTGTGTATTAAAAATACTTGGTTCTATTGTTGTAAAAGTCTGTGTTTATAAACAACCAGatgattttatatatatttccacattatgtgtgtacatgtgtctaTATGCACACCAACACTTTTTGGAAAGTGAGGTTACATTTGGGATATGTTTTTCCTTGTCCTTTACCCCTTGATTGCCCATTAGAGGAAAATGTCTTACTCGGTTGACaaacaaccccccaaaaaaattctaATAAAATTTGGGAAATTAAATCAGTTTTGTTGTAGTCATCCGGATTGTTTAAAGCTACCTCACGCTGAAAAACAAAGTGAAAAAGTTGACCTTAAATCTTGAGCTGACCAAAATGAGCTTCCGGGTGGAACTGGTGCTGAACAGCTATCTTTGCTTTGCTGTCTTCAGAAGGTGCTATGAGTTCTAGAATTCAGTCATTGTTCCCCCAAACCCCCACTagcctcacacaccacacacacacaccccacctcgGACGACAGGTGCAGCCATTCAAGGCAGGGAACCAAGTGACTCTGGATATTCTCCTATGGAGTCTACGCCCCACAAATAGAATCACGGGACTCCAAGGAGAGCTACCCAAAACAACCAGGGTGgctcgtctctgtgtgtgtgagagggtgtgtAATTTCTTTTGTTGTTACTCATTTTTATTATGATCATGATCATttgtctgtttttattttggtACACTTTTAATTGATGTAAATTGGAAATAAAAAGGAAAAACCAAGTAACAATGAAGTTGATTTTTAATTGCGTTTCTTTTGAGAAAGTACGGACATGGCATGGGAGTTGAATAGCTTTTTTTTTGGTAACTGAACCCAAGGTCTGTATACTTTAAGGTTTTTGTTGTAGTTGTATTTCTTGGGAGTTCAGTTAACTTTTTTTATGTTTGTGAGTGCATGGTATGTGTGTGAGTATGCGAGactgtgcgtgagtgtgtgttttagctatgAGAAAATCTCATTACACAGGAATGAAAGTACTGTCTGTAATCATTCACCGGTTTCAGGGTTGGGCCGGGCATGGTTGGCTTCTGTTTGTTtgaattaataagaataaataaaGAAATTGTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913503 lncRNA upstream 10479 39675013 ~ 39675349 (+) True G802764
TU913111 lncRNA upstream 123097 39558265 ~ 39562731 (+) True G802399
TU913103 lncRNA upstream 129163 39554187 ~ 39556665 (+) True G802392
TU913037 lncRNA upstream 169790 39436366 ~ 39516038 (+) True G802328
TU913519 lncRNA downstream 547 39716433 ~ 39716670 (+) True G802778
TU913552 lncRNA downstream 59581 39775467 ~ 39775699 (+) True G802811
TU913561 lncRNA downstream 72010 39787896 ~ 39788238 (+) True G802820
TU913580 lncRNA downstream 98289 39814175 ~ 39817115 (+) True G802831
TU913625 lncRNA downstream 165308 39881194 ~ 39894131 (+) True G802875
XM_021615634.2 mRNA upstream 44939 39639241 ~ 39640889 (+) False spryd4
XM_021615620.2 mRNA upstream 143162 39531488 ~ 39542666 (+) False g6pd
XM_021615635.2 mRNA downstream 15062 39730948 ~ 39747079 (+) True map3k12
XM_021615647.2 mRNA downstream 133865 39849751 ~ 39855939 (+) False stac3
XR_005053243.1 mRNA downstream 133865 39849751 ~ 39855939 (+) False stac3
XM_036987962.1 mRNA downstream 133887 39849773 ~ 39855939 (+) True stac3
XM_036987963.1 mRNA downstream 149997 39865883 ~ 39873666 (+) True LOC110531167
TU913483 other upstream 44959 39639254 ~ 39640869 (+) True spryd4
TU913038 other upstream 212271 39465973 ~ 39473557 (+) True adcy6a
TU913020 other upstream 268368 39415875 ~ 39417460 (+) False G802324
TU913562 other downstream 73771 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 76031 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 94441 39810327 ~ 39812025 (+) False G802830
TU913578 other downstream 94441 39810327 ~ 39812025 (+) True G802830
TU914248 other downstream 670879 40386765 ~ 40389052 (+) True LOC110532068

Expression Profile