RNA id: XM_036987963.1


Basic Information

Item Value
RNA id XM_036987963.1
length 1931
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110531167
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39865883 ~ 39873666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCACAGAGCCATGGACCTCACGGCAGAGTGTCATTGAAGCCACTACCAACATTTTCTGACTTTTGAATCAGTCTGAAGTGTTCTAAGTTTTCTTCCAAGGGAATTGCTCCCAGACTTTGATTGCCACAGTGTCCAGATTTGTTCGACATAAGACATTCAGGGACGAGATGAGGATACTATTCATCAGCTTTGCCATCTTCTGTCTGTGGCTTCTACCAATGGTGCAGGAGGAGGATGCTGGGAAGACCTTGGACTATCTGAACCTCGATCCAAATGTTGACAACACCTCACAGCCCCTTACCTACGAAACAGGAAGGAGGGGGAAAGAAGGAAACCTTGGAGCTGCATTGAAAGTCAAACACCTTTCCAAAGATGTATCCACCAAGCCTAAGGCCTCCAGCTATAGCTCTGTGGGCCCATATGGCTGGTCACAGAACCTCTCCCTCCCCTTGGATCAGTCACAGTTTCGCTCCAAATCCAAGCCCCCCATAAAAACACCTATCAAGGTCAAGAAGACCTTTGGGTGGGGCAACTTCTACCTCAACATCAAAACCATCAAGTTCAGCCTTCTGGTGACAGGTAAGATAGTGGACCACATCAACGGCACCTTCAGTGTGTACTTCCGCCACAACTCGTCCCGTCTGGGGAATATCTCAGTGAGCATCGTTCCTCCCTCCAAAGCCGTGGAATGGGAGGATGTGGGACGCCCGAAACTCCACTTCCAGAGTCAGCCGCAGTCCACCCCCAATGAGCACCGGCAGGAGATGAATGCCCTCAACTGCGTGGTGGAGTACCAGAGGACCAACAGAGCCAAGAAAACAAAGCCATGCCTCTACGATCCCTCCCAGACCTGCTACTCAGAACACACCCAGTCTCACGCCGCTTGGATCTGTGCCAAGCCCTTCAAGGTCATCTGTGTATTCATCTTTTTTCTCAGCGCCGACTACAGACTGGCACAGAAGGTCTGTCCAGACTACAACTTCCAGGCTGATCTCCAGCACTTTGGAAGACGAGGATAGTGGATGAACTAGGCGGGTTATTAAAGCATGTTTTCCTTCATCTCCTATATCATTGGAGAaagggtagagatggagagatttgCTTGGTAGAATGGAAGTCGTCAGTACCGGGATAATATTTTGATAATACACCACTGAAGGGTAGAAGAATTACAGAATATCGAGTAGTGGttgttatagtagtggtagtagttgttaTATTTGGGGTCAAATATTGAATTGGTTGGAGTGATGCTCCATGTGCATGCCAAAGCAGCTGGTATTAGCACAACAATAATTCCTATTTTTTACTACTGTAATTATGTTTGTGTAAATTGTCTGCTTTTTTGTCACATATTGCCCATCTGTGATGGCCCTTACATTAAACCTTTTCACTATTCATTTGGGGACATATTGCAACCAAGGCACCGCATCTACACAAAGAAAATGCCAACCTAACCAATTGCTTAATGTCTGTGAGTTGAGTGGACTTCAAAAGGAAATTAATTTGAGCTAGTGTTGAGGTTTGTTTTAGCTGAATTTCAACAAGCTTGTTGAGTAAATTACAAATGTGTGTTTGCTCAAAACCACTGAAAATCACACTCATCGTTATCACATTTCCCAGGGtgctctattgcaggttgattttcagaattgtttgctTCAATAACTGTGTTGTTTGTACATTGACTGGTTGATTAATCGTATACTACACAAACATAAATAACATACTTTTTTCCAATCTAATCCAACTTGTTAGTACTTGGGTTTATTACACCCGTTACTGAGATGTTAATCTCAGTTAACCCAGAACCAGGGCGTTGCCACCCATTggagagccaggcccacccaatcagattgagcAACAACCAAagatatgtataaatatatatacacactgaacaaaaatatgaacacaacatgtaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913580 lncRNA upstream 48768 39814175 ~ 39817115 (+) True G802831
TU913561 lncRNA upstream 77645 39787896 ~ 39788238 (+) True G802820
TU913552 lncRNA upstream 90184 39775467 ~ 39775699 (+) True G802811
TU913519 lncRNA upstream 149213 39716433 ~ 39716670 (+) True G802778
TU913503 lncRNA upstream 190534 39675013 ~ 39675349 (+) True G802764
TU913625 lncRNA downstream 7528 39881194 ~ 39894131 (+) True G802875
TU913652 lncRNA downstream 43473 39917139 ~ 39949106 (+) True G802900
TU913674 lncRNA downstream 77135 39950801 ~ 39951044 (+) True G802919
TU913675 lncRNA downstream 77465 39951131 ~ 39951528 (+) True G802920
TU913677 lncRNA downstream 78756 39952422 ~ 39954470 (+) True G802922
XM_021615647.2 mRNA upstream 9944 39849751 ~ 39855939 (+) False stac3
XR_005053243.1 mRNA upstream 9944 39849751 ~ 39855939 (+) False stac3
XM_036987962.1 mRNA upstream 9944 39849773 ~ 39855939 (+) True stac3
XM_021615635.2 mRNA upstream 118804 39730948 ~ 39747079 (+) True map3k12
XM_021615630.2 mRNA upstream 149997 39685828 ~ 39715886 (+) False LOC110532038
XM_021615650.2 mRNA downstream 66099 39939765 ~ 39946085 (+) True LOC110532052
XM_021615653.2 mRNA downstream 87805 39961471 ~ 39962986 (+) False LOC110532054
XM_021615654.2 mRNA downstream 139430 40013096 ~ 40046553 (+) False LOC110532055
XM_021615655.2 mRNA downstream 139435 40013101 ~ 40046553 (+) True LOC110532055
XM_021615658.2 mRNA downstream 183142 40056808 ~ 40063855 (+) True LOC110532057
TU913576 other upstream 53858 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 53858 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 73550 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 75481 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 225014 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 513099 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 569230 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 593962 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 1147270 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1561218 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile