RNA id: XM_021615650.2


Basic Information

Item Value
RNA id XM_021615650.2
length 5478
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110532052
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39939765 ~ 39946085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGCTCTGTTTTTTTCTCAATCCAGGACACTATATTTTTCTCTTAGATCCCTCCCTGTTGTTAGGGCGCTAGGTTGGTTCAAGTGGCTTCCCTTTTCATCCAGTGGGATTTTCAGACAGACAACCTGAGTTCCTTTTGAGTCTTGCCACCCAATTATTGTGGCCATGGCAACTATCTGAGACTTTTCCCCCCAGTTGGTTGTTAGCAGGCTATACGCCAACAGTATCTTTCCCCCTTTCACATATTCCTCTCTCATCTTTGCTGAATTAATCCTCGCCTCTGTAACCCGAAGCTAAATTGGTCATCGCAACAACCAATTTGATGCCATCTCAGTAATAATATGTCtgaagataaaaaaaaatctgaagttCCAAATGTGCAAATACAGATAGAGaacaaaatgtttttgttttcagATTTGTTTGCACATTTCACTGAATTCAAACCCATGTTCCATTATGAAGGTGCAGTTGCTGTTAATGTGAAtccagttggtggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatttgcAGCCTATCCTCTGTCCCAGTATTAGCCCAGGGTTTTGCACATGATGGGGGAGGGAGGCTTAGTCACTGAGATGCCCCAAGGACTCTCCGGGGAATATTCTTTCCTCACTATcctccactaaacacacacacacacacatgtgcctCCACACACATATAGAGATTAGCCCTATCTCACAAGGGTGGGTGAGCCACatgcatacatgcacacacacacacacacacacatacatacacgtacacatacacacactgtgcaTGCCTGAACACAAATGGCAGCATGGCAAAGCAGCCTATGCCAAGCataaaaatatgtggaactttCTCTGTCCTCTGGGTTGATACTAAATTTagagctttcattgtctttcACGTTTTTGTCTCTTACCAACTCACAATTCAACACGAGCAAAATGGCAGTTGCGTCTTTCATTCATTTTCATAATATATTCCAACAGAAGGAAACATTAGAAATGCTTTGAAGTCCTCTTCTTCAACAATGTGCTCGAGCACATTTTGCATACGCAGGCACCAAAACCTGACGACAGTAATACTGCAATGCGTTGTGACGTGTCGGAACCGATTACTAGGAAAAATATGAGGTGCCTCTTATCATCTGAGGGATTACTGTTGGAGGCATCAAATGTTTCAGAGATTTAGCCTATTCTTCTTAATTTTCTTAAATATTTCTGCATTTTAATGTCATATCGTAATTTGGGAGTTATAAAGCAGACGCACATGACATGAGTGTTGAATCAAACTAAAATGCCATGCGTATTCAAGACACCCGACATAATATATTAGCCATTTGGTTTCCAGGCCACCTAACCATGAGGAATTGAGTCATTCTGAGTAGGCTACATTGGAAATATACTGTAAAACTACAGGGGGCATTTAAAATGTACTAGGCCATTACAGACAGTTTATAGCACACATGCGCAACCGCAAAGCTCTAGTCTGGGTAGGCTTACCAGtctttttagctaacattccactccttgtaacCTACTCTTTGGCATATGACACCGAAGGAGTCAGTGAAACGTTACCTAAAAAGAATGGTACTAGCAAGGCCTGTCCAAGGTTCTGCAATGCGGAAACGAGTTGAATTTTCTCATGCCGATGCACGCGGGTCATTCTCTCTAATTTAGCAGCTGAAAAAACATggaatttattacatttttaagtATCTGACTCCATGAACAAAACTGTACTTAGGCTACGCAGGTGTAGCGGGTAGTAAGTTGCCTATTATCGATTAAAATGCTCGGACAACAAATAAGAGACCATATTAAAACAAGTTTTGTTTTGCTATAAATTaggctacatttaaaaaaaaagtttaagtGCATTGGCTACTTGGGTCAAAGGGGCATGAAACACAACTTTGGATCCAAATTCGTATAGCGATTAAactaaaacacaaaaataaataatctaACGAATATACTAGGCTTTGatatttaaatattttatatttactCCATAGACATTAAAGTGATTTTACACCTCTGATATTTGTTTTTGCATTAGGAATAAAAAGActaagacagtgtgtgtgtgagatataggCCTATGAATGGTTCGCAGTGTAACTCCCTAATGTCTGATTTTGAAACGAACATACGTGTCTGCAATTAGAAACTAGATTTATATGAAACTTATATTATCTCTGCCGGATCAATACAAGCATAACGAAAAATTATTGGAACAAATAATGAatcaaattgaaaaaaaaaaatggaaaaaaaaaatacaaaataattaaGCCTAATCAAATATGCAAAATTTGCTTATTCGAATAAGTAAAATATTTGGTATAAATGAATCGTAGGAGCTAGCATCCATGCCTCTGGTAACAAACACCCTTTTCTCCTTCCAAAATCTCaaagtaatctctctctctctctctgtcactcactcacgcactctctcactctctcacatacacacacaccgctTCAGAACCATGAGGGGTTTGTGCATGCTGAGCAAGTCATTGCATTGGCAGTCTATGAGGACACGTGCCTAGTCCCCCTCTAAGATTCTGCGGCTTGTGGTTTGCACTTGTCACGGCTATAGCAAAACTGAGCGCAACATCAAGACCAACACCGACAACTGCATGGAGAGGTCACAAACAGGGACATTCGATCACATTAAGCAACATGATCAATTTGAATGAGGATGAATTGTTTTACTTCGTTTCTTCTGATGCCAAGAAAGTGACAGGAGGGATTTGAGAGTGACATGGATAATCAAGACCAACAGACGGGATTTTAAACGACAGCCTGTGTGGATGTAACGGTTGGGCAGTCGTTAAGAGCAACGTCGATACGTCTTGGCAACAGGCATGATTATCTTTCTCTCACAGCAACAGCAGCCAAAATAGCTCATAAgcacactgcatgtatttattcaACAATTTTCAAATTTGATCCAAATGAATATCTGAATATTCACATTTTATCTCACAACAATGGCTCACTTAATTCGACACAAGATCGGCAACAAGCTGACCAATGCAGCCAACACAGTGTCCAATAAGTCTCAGGCCAAGGTCAGCGGAGTGTTCGCCAGACTGGGTTTCCAGGCCGCTACAGATGAAGAGGGTCTGGGGTTCGCGGACTGCGATGACTTGGACTATGACTACAGGCAGGGCATGCAGATGGACATCATGCAGGGCGacgaggaagggggagagatggacgGAGGAGACGAGTTGATGGAGGGAGACAGCCACTACCAGAGAGATGGCACGGGCCCATCATCCTCCTCCATCAAGAACACTGGGGCGTGTAACGAGTTGGCATCAGAGGTCAAACCCAAAATTACGTCTTGGGAAGCGGGGTGGAACGTCACCAATGCCATTCAGGGGATGTTCGTCCTTGGGTTACCCTACGCCATTCTTCACGGAGGATACCTCGGACTCTTTCTAATCATATTTGCGGCTGTTGTATGTTGTTACACCGGAAAGATTCTTATTGCGTGTCTGTATGAGGAGAACGAGGATGGAATTCTGGTGCGCGTGAGGGACTCCTACGTGGACATCGCCAACGCGTGCTGCCAGCCACGGTTCCCGTCTCTGGGCGGGCATATCGTTAACGTTGCTCAGATCATTGAGTTGGTCATGACCTGTATCCTGTACGTGGTGGTCAGTGGCAACCTGATGGTCAACAGCTTCCCCAATCTGCCGGTCTCGCAGAAGGCCTGGTCTGTAGTCGCCACGGCCGCCCTCTTGCCTTGCGCGTTCCTCAAGAGCCTCAAGACTGTGTCCAAGTTCAGCTTGCTTTGCACTATCGCGCACTTCGTCATCAACATCCTGGTAATAGCCTACTGCCTCTCCAGAGCCCGCGATTGGGCCTGGGACAAAGTCAAATTCTATATTGATGTCAAGAAGTTCCCCATCTCTATTGGCATCATCGTCTTCAGCTACACGTCCCAGATCTTCCTGCCCTCGCTGGAGGGGAACATGCAGAGGCCAAGCGAGTTCCACTGCATGATGGACTGGACCCACATTGGAGCCTGCGTCCTGAAGGGCCTGTTCGCTCTGGTGGCCTACTTGACTTGGGCAGATGCCACCAAAGAGGTCATCACGGACAACCTGCCGTCCACCATCAGAGCGGTGGTCAACCTATTCCTTGTGGCTAAGGCCTTGCTGTCATATCCGCTGCCATTCTTCGCTGCTGTAGAGGTCTTGGAGAAGTCTTTTTTCCAGGATGGAGGGCGCGCCATATTCCCTGATTGTTATGGCCCGGGAGGAAGGATTAAGTCCTGGGGACTGGGTCTCCGGTGCCTCCTGGTGGTGTTCACGTTGGTCATGGCCATCTTTGTCCCTCACTTCGCACTCCTCATGGGCCTCACCGGGAGTCTTACCGGCGCCGGATTGTGCTTCCTTCTCCCAGCTCTCTTTCATCTAAAGCTGATGTGGAGGAAACTTTTATGGCACCACGTGTTCTTTGACGTCGCCATATTTGTCATAGGGGGGATATGCAGCATTTCTGGTTGTATTCACTCAGTAGAAGGGCTCATCGAGGCATTCAAATATGGAGTCGAAGAATAAGAACGTTCTACCTCTGTAGCCCATACCTTACATTTGGTCATACTCTCATCAATCATAGGCGCGTAATGACAGACTGATTGACAGCGCATAAGGGATACTGTGTAATTGTTTTACTTCGTTTTTTTGTTTTGCCTTCTTGATGACAATGTGCAATAATCAAATTTATAATCATAGTGTAGAGTATTCAGTGCTGAAATTTTGTGTTAACTAGGAAGGGGGTAATGTAGTGTCCTTGGAGAATGGATCATCTCTGAAACAGTGAATATCATGCAAGGTTCGATCAGGCAAGGTTAGCACAGCCCTTGTGAAAATGAGCTGTGCATAGGCCTCACTTATGTGTGGATGTGTTGAATCTGCATTGAGAATGAGTTTATTAGCGTTTTATTTTTGGTTTCTAGCTGCTAAAGAATTAGATAATAATCTCAGTCGATTTAAAGATAAAACACGCTCGGGGCACACACGTGGGATGGAGCTATAGGATAAATGTAGTTGGTTAATCAAAACATTTCGATTAGTTTTCAACTGTACTTGGTTTTTGGTGTTTCAAGTGTCATTATGGATTAAGTGAATTATTGCAGTGCAAACCAGTGGCTCTAAATGTTTATATGAAACCATCTGTCTTCTGTAGTCTACCTATATGTTGAATGTGAATTGTGCTTTCATTGAATTTATCATGACGTGTAAGAAAAGAGTATGTGTTGAATTAGCAGAGAAATTAATCGAATATTTTATGCGTTATGTTCATATCTTTGGATTCATTATATGTCTATAATTTGTGCACGCTCATGTTTGTGGGAAAAAAATAATATATGGGTGAATAAAATCTATGTTTTTATGGATGAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913625 lncRNA upstream 45634 39881194 ~ 39894131 (+) True G802875
TU913580 lncRNA upstream 122650 39814175 ~ 39817115 (+) True G802831
TU913561 lncRNA upstream 151527 39787896 ~ 39788238 (+) True G802820
TU913552 lncRNA upstream 164066 39775467 ~ 39775699 (+) True G802811
TU913519 lncRNA upstream 223095 39716433 ~ 39716670 (+) True G802778
TU913674 lncRNA downstream 4716 39950801 ~ 39951044 (+) True G802919
TU913675 lncRNA downstream 5046 39951131 ~ 39951528 (+) True G802920
TU913677 lncRNA downstream 6337 39952422 ~ 39954470 (+) True G802922
TU913680 lncRNA downstream 14470 39960555 ~ 39960856 (+) True G802925
TU913676 lncRNA downstream 15448 39961533 ~ 39962619 (+) True LOC110532054
XM_036987963.1 mRNA upstream 66099 39865883 ~ 39873666 (+) True LOC110531167
XM_021615647.2 mRNA upstream 83826 39849751 ~ 39855939 (+) False stac3
XR_005053243.1 mRNA upstream 83826 39849751 ~ 39855939 (+) False stac3
XM_036987962.1 mRNA upstream 83826 39849773 ~ 39855939 (+) True stac3
XM_021615635.2 mRNA upstream 192686 39730948 ~ 39747079 (+) True map3k12
XM_021615653.2 mRNA downstream 15386 39961471 ~ 39962986 (+) False LOC110532054
XM_021615654.2 mRNA downstream 67011 40013096 ~ 40046553 (+) False LOC110532055
XM_021615655.2 mRNA downstream 67016 40013101 ~ 40046553 (+) True LOC110532055
XM_021615658.2 mRNA downstream 110723 40056808 ~ 40063855 (+) True LOC110532057
XM_021615663.2 mRNA downstream 129767 40075852 ~ 40085818 (+) True LOC110532060
TU913576 other upstream 127740 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 127740 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 147432 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 149363 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 298896 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 440680 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 496811 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 521543 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 1074851 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1488799 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile