RNA id: XM_021615663.2


Basic Information

Item Value
RNA id XM_021615663.2
length 2079
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110532060
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40075852 ~ 40085818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCGACCTCATTACGTTAGTCCACGATTGCGCATTGGTAATTTACCGCTGATGCAAGAAGTGTCGGCGAATTGAAGTGAGACTGGTCGGGGGATAAAAAAACTTCCTAGATCGTTCTTGTTCTTTCCGCAAACATGTCAGGAGACGAAATGATATTCGACCCCAACatgaccaagaagaagaagaagaagaagaagcctttCATGCTGGAAGAAGAAGGTGGAGACGGAGTGGCAGAGGACACACAGCAGGTAGAGGCCAAGGAGGTGGAACCTGACggtggggaggacagagagttCGACCTGGACGAGGACGAGGGAAGGAAGAAAGAGCAATCCGACGATCTTGATGACCTGAACTTTTTCAaccagaagaaaaagaagaagaagcccAAGAAAGGGTTTGATAATGACATTGAGGAGGGGATAAAGGAGCTGAAAATTGAAGAAGAGCAGAGCGAGGCAGCGGAAGAGGACGACTTGGATCTTCAGTTGCCAGCAAAGAAAAAAAAGTCCAAGAAGGTTGACTtccaggaggaaggagagatactTGAGAAGGACGATGGCCTCGAGGACGATGAGGAGGGAAAAAATGATGGCATCTCATTCAGCTCCCAGTCTGGTCCGGCGTGgttagggacagacagagactacACATATGATGAGCTGCTGAACCGCGTCTTCAACATCATGCGGGAGAAGAACCCTGACATGGTGGCCGGAGAGAAGAGAAAGTTTATTATGAAGCCCCCTCAGGTGGTCCGAGTGGGCACCAAGAAGACCTCGTTTGTCAACTTCACTGATATCTGTAAACTGTTGCATCGTCAGCCAAAACATCTTCTGGCATTTTTATTGGCTGAGCTGGGGACAAGTGGCTCCATAGATGGAAATAATCAGCTTGTGATCAAAGGAAGATTTCAACAGAAACAGATTGAAAATGTCTTGAGAAGATATATTAAGGAATATGTGACATGTCACACGTGTCGCTCCCCTGACACCATCCTACAAAAGGACACCCGTCTCTACTTCCTCCAGTGTGAGACCTGCCACTCACGCTGCTCCGTGGCCAGCATCAAGACTGGCTTCCAGGCAGTCACGGGCAAGAGGGCACAGCTCCGTGCCAAAGCCAACTAAGGCCAACCACACCCTggcttctccctctctgacccGCCGGAGCTTTGGATCCTCTTGATAACTGGACTTTTGTTTGGAGTCCGAGAGGGTTTGTTGTTGTCGCTGCATTATGTGAGAGAGAAACGCTACAAGCTCTGAGGCTCAAAGGTCTTGCAGGTCATAAGGAGCAGTGCGCAGATGCATAAGGTTTCACAGGCAAACCCCCAGTTTTCTCTTTTCTCAGCTGTGGGCAGATTCTTTCAGAGCTTCTCTATTCCCTCCAAGTGTGTCTTCTTCCCACATTTCTTCAATCGTATGTAGCCCACATATCGGATCATAAAGACAAAGCTGTTATGACAAAGTAATTGATATTGGCTTTCCTTTGGTTGAAGCATAGTGGGTGTGTAAACAAACATTTTAAAGATGCATTCCAAGAGCTAGGTTTCAGTATCATGTATGTACCCTTTTGCACTGCCGAGCCATACTGTATGGGCCTGGTTACGCATCCACCACAGCTGCATGAACTGTGCTTGCTTCAAGGCAGTAGAGTTTCAGCAGGATATTGTGAAAGGGTTATGGAGAGTCGGTTTTTCAACTTGTATACCCTCCTCTACTGCTTTTACGGGCTTATCTGAGATCTGTATACTATCATAGCAGACTGTCAGTGGGTGGAAGTAGCTGGGTGTCCTCCAGTAAGAGTACATTAATTACTTTCAAACTGAGACTACAGAATATGTGGGACAAACGACAATGACATCTATttattgtgtgcgtgtgcgtgcgtgtgcgcgcttTTATGGCAATTACAAGATTTTAACTTTGACTTCCGATCCTCGACACTTAGGAAAAACATTATTCTGCCTGGTCACCTAGTATTAAGAAGATTGTTGCTTTCAAAtagcaaacaagaatcttacaaggTATTCACATAGTATCAAATATACTCCGGATTTGTTCAGAAAGCATA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03238 EIF2S2; translation initiation factor 2 subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913750 lncRNA upstream 4139 40071506 ~ 40071713 (+) True G802981
TU913747 lncRNA upstream 7427 40067912 ~ 40068425 (+) True G802978
TU913736 lncRNA upstream 16288 40032634 ~ 40059564 (+) True G802967
TU913735 lncRNA upstream 16465 40032362 ~ 40059387 (+) True G802966
TU913702 lncRNA upstream 70703 40004923 ~ 40005149 (+) True G802947
TU913765 lncRNA downstream 29221 40115039 ~ 40115538 (+) True G802996
TU913766 lncRNA downstream 30803 40116621 ~ 40116975 (+) True G802997
TU913767 lncRNA downstream 31771 40117589 ~ 40117828 (+) True G802998
TU913790 lncRNA downstream 84464 40170282 ~ 40173004 (+) True G803017
TU913799 lncRNA downstream 98223 40184041 ~ 40184930 (+) False G803026
XM_021615658.2 mRNA upstream 11997 40056808 ~ 40063855 (+) True LOC110532057
XM_021615654.2 mRNA upstream 29299 40013096 ~ 40046553 (+) False LOC110532055
XM_021615655.2 mRNA upstream 29299 40013101 ~ 40046553 (+) True LOC110532055
XM_021615653.2 mRNA upstream 112866 39961471 ~ 39962986 (+) False LOC110532054
XM_021615650.2 mRNA upstream 129767 39939765 ~ 39946085 (+) True LOC110532052
XM_036987969.1 mRNA downstream 193 40086011 ~ 40090648 (+) False LOC110532058
XM_036987968.1 mRNA downstream 284 40086102 ~ 40089385 (+) False LOC110532058
XM_036987966.1 mRNA downstream 284 40086102 ~ 40090648 (+) False LOC110532058
XM_036987967.1 mRNA downstream 287 40086105 ~ 40090648 (+) True LOC110532058
XM_021615669.2 mRNA downstream 8864 40094682 ~ 40098605 (+) True LOC110532062
TU913576 other upstream 263827 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 263827 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 283519 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 285450 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 434983 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 300947 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 357078 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 381810 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 935118 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1349066 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile