RNA id: XM_036987967.1


Basic Information

Item Value
RNA id XM_036987967.1
length 2370
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110532058
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40086011 ~ 40090648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCAATGAAGACTACCTGGAACGCAACCTAAATTGCCGACGCATGTGCAGTGAATGCACTTCCTATTCCGCTCAACGCGCTGCGTTTTCTTCTTTAACCAAGCTTATTTTCAACGTAAAAAAAAGTAACCGCGTGTTGGCTCAAGACAATCCGACGTCATGAGCTTGTTTGGGACCAGCACTGGGTTTGGCGCAGGGGGATTCGGAGCGGCAACCACGGACACACACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTTAGTCCCCCTGCCATGCCAGGGAACTTCTTGATAGGGGGGTCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAATGGGCAGACAGTCCCCAAAGCCCAGCAAATGCACACAGGTCCAGTCCTTGATGTCTGTTGGAGCGAAGATGGAAGCAAGGTTTTCACTGCATCTTGTGATAAGACTGCCAAAATGTGGGATCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAGTTCTGGGACACCCGTTCGCCCAACCCAATGATGTCCCTGCAGCTGCCGGAGAGGTGCTACTGTGCAGACGTGGTGTATCCCATGGCAGTGGTAGCATCGGCAGAGCGAGGTTTGATTGTATATCAGCTTGAGAACCAGCCGTCCGAGTTCAGGAGGATAGACTCACCACTCAAACACCAGGTGACTGGTTTCACATACCAGCACCGCTGCATAGCCATCTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTTGGGAGCATTGAAGGGCGGGTCGCCATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTCAAGTGCCACAGGTCGAATGGAAccaacacaaccacaccacaagaCATCTATGCTGTGAATGCCATCTCCTTCCACCCTGTCCACGGTACACTGGCGACTGTTGGGTCTGACGGTCGCTTTAGCTTCTGGGATAAAGACGCTCGCACCAAGCTGAAGACCTCGGAGCAGCTGGACCAGCCAATCACAGCTTGCTCGTTCAACAACAACGGCAACATCTTTGCCTACGCCTCTAGCTATGACTGGTCAAAGGGGCATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCTCGGAATAAGAAATGATCTGTCCTGTCTCTCCTGCTGTTTGCAAAATGGAGGTTTGTCAAACGCACACGTGATGCCTGCACGACTCTGTTCCTATCCTGTGCCAACACCAATGGTGGAGCTGCTGCTTGCAAAAGGACCAATCACTGGAGGTCTTTCATCTTCTTGGCATTGGCCTGGATCTCTGTCCCAGCCACATGCATCCAAATAGGGGTTGGAGAGTGAGGAGATGATATTGTTTTGTAATATCtgatattttattttctattgtcagtagctaggtttccgtCGAATTGCTGACAGatttttcatgtgaatattcttaAATCTGCTGAAACTAAATCTGAAAACAATGTGTGCATTtttccaccagagatgtttccatccaATTGATTTTTTGTGGGTAGAAGGATGTGCTTGATGGCATAGTGCACATACAAATAACGTTtgtggttaaattcccatgtactaaataaaaattacaaatgaaatgggtttccatcgcattttcaactcttgatggttttgtcacaaaaatgTTTGTTATATAGCGAATGTGGCCATAGGCACGTGCGCTCCAGCTAACAGCAGGCAGATAGTGTGGGTTTAGCCTACTACTACAGGATAAGATTATTATGGTCAAAAGAGCAAGATTATTTGTATTtatcaaacggcagccaagcatagatcatgtcaccagaataagaccctcaacaTTTATTGGAAAGTAGCAtcaaagctcatcaccgtgcactccCCGCCCTGTGAAGTttatcataacttatttcatcgcATGACTCCCAAGTTTACTTCGTTATTATATCAACATTTGCGCATAAAGCATTTCCACCGCCATTACTCGCATAATTACATTTACAAAGAAAATATGCCACGTCTAGCAtattgttttgtcgacattttaaaagtttaccgacaaatttgctgtttccatcaggcctggcATTAAATATTTTATCCAACGTACTTTACTCACATACagagttggatggaaacctggtaaCTGACACCATGATTGCATGGTGCTCTGTTACATTGTTGTACAATTTAATGACATTGAAGAATTAAATAAATTAGTAAATAAAGACAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14298 RAE1, GLE2; mRNA export factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913750 lncRNA upstream 14392 40071506 ~ 40071713 (+) True G802981
TU913747 lncRNA upstream 17680 40067912 ~ 40068425 (+) True G802978
TU913736 lncRNA upstream 26541 40032634 ~ 40059564 (+) True G802967
TU913735 lncRNA upstream 26718 40032362 ~ 40059387 (+) True G802966
TU913702 lncRNA upstream 80956 40004923 ~ 40005149 (+) True G802947
TU913765 lncRNA downstream 24391 40115039 ~ 40115538 (+) True G802996
TU913766 lncRNA downstream 25973 40116621 ~ 40116975 (+) True G802997
TU913767 lncRNA downstream 26941 40117589 ~ 40117828 (+) True G802998
TU913790 lncRNA downstream 79634 40170282 ~ 40173004 (+) True G803017
TU913799 lncRNA downstream 93393 40184041 ~ 40184930 (+) False G803026
XM_021615663.2 mRNA upstream 287 40075852 ~ 40085818 (+) True LOC110532060
XM_021615658.2 mRNA upstream 22250 40056808 ~ 40063855 (+) True LOC110532057
XM_021615654.2 mRNA upstream 39552 40013096 ~ 40046553 (+) False LOC110532055
XM_021615655.2 mRNA upstream 39552 40013101 ~ 40046553 (+) True LOC110532055
XM_021615653.2 mRNA upstream 123119 39961471 ~ 39962986 (+) False LOC110532054
XM_021615669.2 mRNA downstream 4034 40094682 ~ 40098605 (+) True LOC110532062
XM_021615664.2 mRNA downstream 8086 40098734 ~ 40109207 (+) False LOC110532061
XM_021615666.2 mRNA downstream 8086 40098734 ~ 40109207 (+) False LOC110532061
XM_021615667.2 mRNA downstream 8086 40098734 ~ 40109207 (+) True LOC110532061
XM_021615670.2 mRNA downstream 29833 40120481 ~ 40135587 (+) False LOC110532064
TU913576 other upstream 274080 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 274080 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 293772 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 295703 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 445236 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 296117 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 352248 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 376980 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 930288 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1344236 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile