RNA id: XM_021615670.2


Basic Information

Item Value
RNA id XM_021615670.2
length 2694
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110532064
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40120481 ~ 40135587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAACAAGTTCATTCGCTATATTCGCTCTGGTCTTCTCCTTTTAGCGCAAGAAGTATGAACGCGCTGAAGTCTGCGGAGGCTGTAAATACTGTACGGCCACTTCAGACGGCGGATTGACCAAACAGAAACCTACAACTAGGCATTGCACGTATCACGCAGCAGTGTCAGAGAGGAAAAAAGGTCTGGGAAGCACTGATGTAGGCTCCCCGGTGGGCAAGGAATGGACCAAGGCCATGGCGAACTGTAATCCACTTAGATCACCGCCCTCCGCCCTCAGTGAGGTCAACCTGGGACCCTCGGCAAACccacaTGCCAAGCCCACTGACTTTGACTTCTTGGCTGTTATTGGAAAAGGGACCTATGGGAAGGTCCTGCTCGCCAAGCTCAAAGCTGACAACAAATTCTATGCGGTCAAAGTTTTACAGAAGAAAGTCATCCTGAAGAAAAAGGAGCAAAAGAACATCATGGCAGAGAGGAACGTGCTGCTGAAGAGCCTGAAGCACCCTTTCCTGGTGGGCCTCCACTACTCCTTCCAGACCCCAGAGAAGCTCTACTTTGTCCTGGACTATGTCAACGGGGGAGAGATTTTCTTCCACCTGCAGAGGGAGCGGTGCTTCTTGGAGCCGAGGGCTCGGTTCTATGCTGCCGAGGTTGCCAGTGCCATCGGCTACCTTCACTCCCTCAACATTGTTTACAGAGATTTAAAGCCAGAGAATATTCTCTTAGACTCTCAGGGCCACGTGGTGCTTACGGACTTTGGGCTGTGTAAAGAGGGAGTGGAGCCGGAGACCACCACGTCCACTTTCTGTGGAACCCCCGAGtatttGGCCCCTGAGATTCTGCGTAAGGAGCCCTATGACCGCACTGTGGACTGGTGGTGTCTGGGAGCTGTGCTCTATGAGATGATCTATAGTCTTCCTCCTTTTTACAGCCGGGACATGTCTGAGCTGTATGATGGTATCCTGCACAAGCCTCTGCCTCTGCCCCCAGGGAAGTCAGACGCTGTCTGTAGTCTGCTCCAGGGCCTCCTGCAGAAAGACCAGCACTGCAGGCTGGGAGCCATCGACGACTTTTTAGAAATCAAGAACCATGTGTTCTTCTCCCCGATTAACTGGGATGACCTGTACCACAAGCGGATCACTCCTCCATACTACCCCAATGTGaaAGGGCCAGCGGACACGCAGCACATAGACCCAGAGTTCACCAGGGAGATGGTGCCTAACTCGGTGGGTCGCACCCCTGAGCTGAACGCCAGCACCAGCAGCAACAGCGCCTTCAATGGCTTCTCCTACGTCTGTGGTGAAGAAGACAGCTTCCTCTAAGACAGGGAAGAAGGGCCCTCGCAGCACCACCACTGCCTGAGCTCGGGGTAGAAGTTACCCCTGACCACATATCTAGGTTTCAATTCCTCAAccccaaatcctaaccttaacctctaagCTAGGGGTGAAAAATATATTTGGCCCTTGATCCGTTAGTGGCAACCTCCTATCTGCCACAGAAATGGAGCACATTGAACAGAATGCATTTTTGTGTAGGCTATGCACAGTGGCTGCCACGTCTGTTTATCTAGACCTCATTAGAACAGGCAGACGCGGCAAACACTAATGATATGTGTGAAACTCTAGTCAAAACCATGTTTCTGCTCTTTAAGTGCCCGTTTTTAATACAAAACACGGTGGACCTTCCAAACATTTGTTATTTGAAATTAAATGTGATGATTGTCCaacaatatatttttgatttgaaAACATGCCGTTTCTGTTATCACAGACTTTTTGTAGATTAGATTAGAGGCTTGACTCTATTTGTTGCATCCAGGCATGCTTAAAGGGATAGCTCACCCAAATTACACATTTACTTAATGGTTTCCTTTCCCTGTCAGCAGTCTATAGAAAAGGTTTGACGGCAATTATAGATGACTTGAACATGCGTGGAAAATGTGCGTATCAGTACCATGACTTGAATgagatttgtgccacaaatgccaCAAAGTCATGGTACCGATATAAGCAATCGATGCTTTGGTTTcatttccctggcactgtttctaAATGTACAAAAAATGAAGACCATTCGCACATACAGGTACTTTGAAAAATGTAAACACTGCACCGTGTTGTTCATCTTCCCAGGTGATTTTATTGAAACAAAGCCTAGAAGCTTAGCATCCACCGTTTTAGCCTTTGTGGAACAAATCCCGATACCCATATTAGCACTTTTTCACACACAGGTTCAAGTCATGTAGACgtgactttgttgagcttcacaatcaaTTTGAGATACTTTCTCGTGATTTGAACATGTCGAAAAATGCTAACATCGGTACGAGGACTTGGATGTGATTTGTTCCACAAATGCTAAAACCTTAGCATTTGGAAACATTTCCAAGGGGGAATAAAACCAAAGCACAGATTGCTGTTATAACATAGACTGCTTAgtgggtaaggaaaccaatgtgttcTTTTGTAATGTGGGTGAGCTATCCCTTTAACAGCAAAATAAACCTACGCCGTCTTCTTACAACTGTAAAGGTGCGTGCCATGGTGTTCTTAACCTTGTGAAACAAGCCATAGGATTGTGTCAACACAACGGGTGACATTAAAGACTGTTGACTTATGCCAGCACCGTGTTAAAGGTGACTGATGCGCAATGAAGTATGTGTACATAAAAACTTTACAATGAATAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913767 lncRNA upstream 2653 40117589 ~ 40117828 (+) True G802998
TU913766 lncRNA upstream 3506 40116621 ~ 40116975 (+) True G802997
TU913765 lncRNA upstream 4943 40115039 ~ 40115538 (+) True G802996
TU913750 lncRNA upstream 48768 40071506 ~ 40071713 (+) True G802981
TU913747 lncRNA upstream 52056 40067912 ~ 40068425 (+) True G802978
TU913790 lncRNA downstream 34695 40170282 ~ 40173004 (+) True G803017
TU913799 lncRNA downstream 48454 40184041 ~ 40184930 (+) False G803026
TU913800 lncRNA downstream 48454 40184041 ~ 40189878 (+) True G803026
TU914152 lncRNA downstream 69323 40204910 ~ 40205256 (+) True G803324
TU914153 lncRNA downstream 69816 40205403 ~ 40205624 (+) True G803325
XM_021615664.2 mRNA upstream 11274 40098734 ~ 40109207 (+) False LOC110532061
XM_021615666.2 mRNA upstream 11274 40098734 ~ 40109207 (+) False LOC110532061
XM_021615667.2 mRNA upstream 11274 40098734 ~ 40109207 (+) True LOC110532061
XM_021615669.2 mRNA upstream 21876 40094682 ~ 40098605 (+) True LOC110532062
XM_036987969.1 mRNA upstream 29833 40086011 ~ 40090648 (+) False LOC110532058
XM_036987971.1 mRNA downstream 17115 40152702 ~ 40164146 (+) False mybl2a
XM_036987972.1 mRNA downstream 17115 40152702 ~ 40164146 (+) False mybl2a
XM_036987973.1 mRNA downstream 17115 40152702 ~ 40164146 (+) False mybl2a
XM_036987974.1 mRNA downstream 17115 40152702 ~ 40164146 (+) False mybl2a
XM_036987975.1 mRNA downstream 17115 40152702 ~ 40164146 (+) True mybl2a
TU913576 other upstream 308456 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 308456 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 328148 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 330079 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 479612 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 251178 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 307309 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 332041 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 885349 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1299297 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile