RNA id: XM_036987973.1


Basic Information

Item Value
RNA id XM_036987973.1
length 5691
RNA type mRNA
GC content 0.48
exon number 8
gene id mybl2a
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40152702 ~ 40164146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagttgaccCTCTGCTTTTCGGTATTATATAACGTTACGAGTGCAACAAATGCTTTGTTTCCGGAGAGCGTTGATGGTCTTGAACGTACCCTTCTTCCTTACCCCTGTTCCCGGGCAAAAAAATCTGCTACTAAAAAAACGCTAGGCGCGAGATAAGAAATTGAAACGCATGAGTCTGGTTGATTCGTTTTCCGCAGTTTAGCTACTCTATTGGCAAAGTATTGTAACTTATTAAAGTAATTTGTTACGGTTAGAGTCCCGTGTCGGTTGAACAGACGGATCTGTGAGGCAAGGCCGCGACAGTTGGGGTTTTGGGGAGGTTTGCTGGACCCTCCTAGAAGCTGGGGGGGAAATGTCCGGTTGGCCGCGCGGGTAAGCCAATGCAATGGGTTTATACCGTTTATCTTATTCAGTAGTGAAAAGGAGCCATGTGCATCAACTTATTCCACCAGAACCTGGAACTGTGACTGTAGACCAGAGAGCGAAAATGCCTTGGTAAATTGTGACGTTATACTTCCAGTGGTCTTCGTGTGCAATTTGGTTGTGATCCCGGAAgctagctcgctagctaacgttgacTGTTCAGTAACAGTTAAACAGCCCGTTTAGAAAGCCGTTGTTATCGCGGCCAGCAGTCGGCTAGTAGTTGTTTGCTAGCAGGCTGGACACGTTCGCTAACGTTACCGGCATCTTCACTACCAGTTGCAGTCAAGAATACGTTTTTTTCTGTCATGTAAGAATGTAACAATTTGCTAATCACAGTTTTAGTTACCCACTTTTAAGTAGCACGGTGCATATTGTGGCATTGATTGGTGAAGATATTACTAAATGTATTTGCCTAAATGAAAGGTTGTATCGCTCGCAGCAGTAACATGCAGTTTGTtgattagctagctaaccaacgtTACGTTGTTTCCAAGACTGGTGGGGTGGGCCTCGTGAATTTGTTACATTCATTGTATGTGAAGACCAGCTTGTTACAATGTTGCGCAGTTTGAAGCACATGTATTGGAATTGTATACTTAATGTTGCCACTTTTTGTTGCAATCCACAGACGCGCATGAGGTACTAGGGCTGCGGTACTGTAGTTTGttcgatttttattttatttttttagtcGAAATAGTTTTGTTAAAGGGTGCACTTAACGATAGGGACCGAGTTACTTTTCACTTTTGGAGCGTTGTAATAAGTAGGACAATTAATGTTATAATCAGCTGGCCTGCATTTGTTGGCGGAAAACCAGGCGTTACAACCATGTGGTGATAATTTTGTCCCAACCGACTGAGAGATACCACAAGTGGAAGGCTCGTTTCGTTGACAGGCTCAGGCTGAATTTCGGCGCTGTACCAACCGTCATTGGGTACAGCACCGTATGGGACATCACCAAGTCATGCAGAGTGAAGATGGAGATGAAATGCTGTGTGTTGACACAGACTCTGATGTGGCGGAGCAGCGGGAGAGTTATAAAGTTAAAGTGAAATGGACGCATGAGGAGGATGAGAATCTAAAGATCCTGGTGCACAACTTTGGAAATAGTGACTGGACAACTATCGCCAGCTTCCTACCAGGACGCACAGAGTATCAATGTATGCACCGCTATATGAAGGCTCTAGATCCAGATTTAATCAAGGGGACTTGGACCAAGGAGGAGGACGACAAGGTCATTGAGCTGGTGAGTAAATATGGGACCAAGCAGTGGGCGATGGTGGCCAGGCACCTGAAGGGTCGCCAGGGGAAGCAGTGCAGGGAGCGATGGCACAACCACCTCAACCCGGACGTGAAGAAGTCCTCGTGGACCCCAGAGGAGGACCTGATCATCTACAAAGCCCACTGTGTCCTTGGGAACCGCTGGGCGGAGATCGCCAAGCTTCTACCTGGAAGGACGGACAATGCTGTGAAAAACCACTGGAACTCAACCATCAAACGTAAAGCCGAGATGGGAGCATATGTTATGGATGATGACGGGAGCCCGCTACCACCCACTTCTCTGGAGCAGGGCGAGGTAGATTTTCGTTGTGACGTTGTTTTGGACACGGAGCCTGAACCTCCAGAAGTGATGAGGCAgtatagagaggctatagaccCCATGCTAAAAATTAGGCCAAAAAAGGACTCTCACCCAGTCAGGTCAAAGACAGTGGTGTTCCCGCCTGTCTTAGCCAAGAGGGACTCCAACAGCCCCTGCTCTAGCTCCGGTCCTAGCAGCGTCCCCACTCTCCACCAGTCTCGCCAGAAGAGCATCACAGAGGCCGTATTACGGATGATAGCGGAGGACATGCTGCCCCTGAGCTTCGTGGAGGGCTCAGGCTTCAGGAGCTTCATGTCTGTTATCGGCCCCCAATATCAGAGGCTGTCCCAGCGTGCCGTGGGCCTCCGGCTGTACGACGACGTGGAGAAGGCAATCAAGCCCCATCTGATCCGCGACCTGAAGACCTGCTTGGCTGCCAGCGCGGGCGATGCCGTTGTCCACGCCACCCTGGACCTCTGGGCCAGCCCCTACGCCGACCCTGTTGTCGCCGTGCAGTTGCACTTCCTGGATGATGACTGGCACATCCACCGGCCCACCGTGGCCTTTCGCCACATCGGCCACAAGAACATGAACGTGGCCATGGCCCGGGAGCTGGAAGCTGTGCTGCTGAGCTACGGCCTGTTCCCCAACAATCTGGGTTACATCATCACCAACGAGGCCAAGCACACCATCGCTGCCTACGACCTCTTTTGCGACTATAGGATCATGTGCTCGTCTCAGAGGGGCGACCCGGACGAGGAGGAGATGCTAGCCTTCCTGGGTGACAAGATGCCCACGGAGGACTTCTCAGAGATCCAGTTTGGCACGCGCGTGGGCTGCGTCGCCAACATGCTGCAGCTGGTGATCAAAGAGGCTCTAAAGAACTCTCGTGTGGTGGAGAACCTGCTGTCTCAGGTGCACAACGTGGTGGCCTTCTTCCGCCGCAGCGCCTACTGGAACGAGGTGCTGCTGAAGGAGTGTGGCCTGTCATTGGCCCCCTCACCCGGCAGCTGCCGCTGGAATTCCACCTTTGTGTCGATGCGGCGGATGGTACAGGAGGCGGTGTGGGGCTCAGTCATGACCCTGCTTGCCCAGGCCCGCATTGAGACCAAGGACTCGTCCAGCTCCCCGCCCATGGTGAGGGCCAAGCGGGAGCAGGTGGTGGACATCATCGGCCTGCTGGAGCCCTTTGAGGAGGCCATCCAGGTGCTTCAGAGCGATGCCGTCACCTTCTCCCTCATCATCCCCTCCCTGATCGGCCTGGACAAGACCCTGGAGACCCGCTCCACCAACTACAGCCACTTCTCCAAGGGGCTCCGCTCCGGCCTGCAAACACACTTCCAGCCCCTCTTCCTGCAGAGGGACCTGATCCTGGTCACGGTGCTGGACCCCCGCATTAAGCTCCAGCCCTTCGATGACGTGAAGCAGGAGGGGGACACCGCCTCCCTGGCCGCCCCCTCCAAGTTCCAGGTCCAAATGCTGGTCAAGTCGTTGGTCAGCGACATGGATTCCTGGAACCCAGTGAAgcaagaggagagtgaagagatccAGGAGGACTCTGAGGCCTCCAGCTCTAACAGTGGCAGCGGCAACCTCAAGCGCAAGTCCATCTTCAGTTTCCTCCAGCCTGCGGCCAAGAGCATGAAGCTGTCTGAGCTGGACCAGTACTTGTCAGAGCCTGTGCTGGATGGGGACGGCTCCACCCAGGTTTTCTGGAGAGACGCCTCACGGTTTCCCCAGCTGCAGAGAGCGGCCAGGAAGCTGCTGGCTGTGCCTGCCACCTCAGGCGGCTTTGATCGACTCTTCCCCATGGCGTCCTGCATCGTCAGGGCCAAGAGGAGCCGGCTGCCCCCTCACACCACCGAGAGGCTGCTGATCTACAGGGAGTCCCTGAGGGCGAAAGACGGGAGGTCCAATTTCAATGGCGCCACTAAACCGTCATAGACATGCTGAACACAGTGCCTGCTACTGCCCTATATATCTCATTATCAGTCCTGTGTGTGCAGGGTCTCTTACCCTAATCTGTTACTCGATTGTCATCCAAGTTTACATGATTGAACAATGAGCCGGGACAAAACCCTGCACACCAAGGATTGAGCTTTGAGGGCTGAGTGATGTCATGTCAACAAATGTAACACAACAGAAATAATACCTCTaaataatgttatttttgtaATTATGAAGTTAATACATTTTAGATATGTAAAACATTTGGAAAGAACATGTTTGGTACACCTTGTAATGGACAATATGGTAAGATGGCCAATTATCTTTGAGTGTATCCTGGAAACTTTTCTTTACTTTTTGTGTTTGGAGTTTGAATCTGCAAACAGATATCGGAAATGAAATCTTCTACATAAGCATTATTTTCATTACCTACTGTAGTTTTttctttaaaggggcaatcagcagttgctacagcTGTTTTTGGACTTATCATTCAtttatatgtacccattgattcatgaagaatataacttagaaatgcctcatgagcttaacTCAACTGCCATACCCTATCAGAACCTGAAatataagtttgttttactctaaAACTATATTatattttgatatcatggatggtcagtccttgcatccaatggctctgtctatgaatttgagagtggttacttttctctagccccatccctcagtttTTTACTGAAACAGGGATGGTGAggacgctttgttattgtttctgcTGCCGATTGCCTCTTTAAGGATCAAGTAGCATCCAGGGAACCTGTGTTATACAGTGACAATTGAGGTCATTGAATGGTGATTGGTTTTTTTCTTATTTGTTTGGTCAAACACAACTTTCAATCAATGGACATTGTTTGCATATATTACTGTAAACAGGTCTTCATCTTGTTGACATATTTCACCAATAGAAAGTGCACTTTTCTCTACCTCTTCATATCGCTACAACTTTGAGGTTTCAGTTGCTTTTCACTGTGAACTCTTGCTTGGGGACTAATCGCATAGCAAGTAGTGCTAGAATAGTAGATTGATATACTGCTTTTCTTTTGAAGCTGCACAAATGTTAATTTGTAACGGCTTGGAATGAGTGATCATTTCTAAGTGTACTTATTTAAATAAAACAGTTCCTTAAGAAATTCATTTGAATTTGAATGTACAGTAGGGGCAGTTTTTGTTAACTAATGATGAGTAATGACAGAGTAAGATGCCTTTATACTGTATGCAACTGAGTCGAGCAGTTAAGTGGTTTCCTTGCCCAAGCCTATAGTATTGGCAGTATTTCCCCTCCCTGAGATTGTCTGGAAATGTCACTATTTCATTCTTTATTCTTATTAATTTTGTGAATAAATAATTTTCTCATTTTCTAAGACTAAAATGTGTCAGGATATCCACACAACTGTAATTTCTCCATGTATTTATTCTATTTGCTTGAAACTAACAATGCGTTGAATGTATGCAATTTACTCCAATCATGTAATGTCATGGATTTCGATTTTTTTATTGGGCTTATTTTGGGGGAGATTGTGTTAAACAAATGCACCCCCCTCGATGTTTCATGAACTACTGGTaattcatatagtactgtgtccAATTTCCCTTTCTCTCACAAAACAACTGTCTTTGGTTGGGCTGAAATGTATGGAAAATAAAGACATTcaattgtattgtattttttatttcagtttCAGGTTCTCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913767 lncRNA upstream 34874 40117589 ~ 40117828 (+) True G802998
TU913766 lncRNA upstream 35727 40116621 ~ 40116975 (+) True G802997
TU913765 lncRNA upstream 37164 40115039 ~ 40115538 (+) True G802996
TU913750 lncRNA upstream 80989 40071506 ~ 40071713 (+) True G802981
TU913747 lncRNA upstream 84277 40067912 ~ 40068425 (+) True G802978
TU913790 lncRNA downstream 6136 40170282 ~ 40173004 (+) True G803017
TU913799 lncRNA downstream 19895 40184041 ~ 40184930 (+) False G803026
TU913800 lncRNA downstream 19895 40184041 ~ 40189878 (+) True G803026
TU914152 lncRNA downstream 40764 40204910 ~ 40205256 (+) True G803324
TU914153 lncRNA downstream 41257 40205403 ~ 40205624 (+) True G803325
XM_021615670.2 mRNA upstream 17115 40120481 ~ 40135587 (+) False LOC110532064
XM_021615671.2 mRNA upstream 17115 40121605 ~ 40135587 (+) True LOC110532064
XM_021615664.2 mRNA upstream 43495 40098734 ~ 40109207 (+) False LOC110532061
XM_036987977.1 mRNA downstream 59044 40223190 ~ 40328855 (+) True LOC110531171
XM_021615676.2 mRNA downstream 194639 40358785 ~ 40371338 (+) True LOC110532067
XM_021615678.2 mRNA downstream 211126 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 211126 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 243666 40407812 ~ 40410397 (+) False LOC110532069
TU913576 other upstream 340677 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 340677 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 360369 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 362300 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 511833 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 222619 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 278750 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 303482 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 856790 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1270738 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile