RNA id: XM_036987977.1


Basic Information

Item Value
RNA id XM_036987977.1
length 7806
RNA type mRNA
GC content 0.53
exon number 47
gene id LOC110531171
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40223190 ~ 40328855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGCCGTTTTCCTGTTGCTTCAGTAGTCTAACCAAAAACTTCGAAGAGACTCGTAGCCTATGGACCACTGATCCAGGATATAATGTAGGCGTCTTTATTTTATCCATCTACGATCCATCATGCGCAACACCCGGATGTTGCAATGCAAAGATGCTTGTGGTGTAGGCTACTCTCTGGGGTTCTGTAGGATTTATGAAATGTTGTTGTTGAACACTTTCGTTTATTGTTACactttttgatattttttttactgtgttGGAATTAAAACGGTGTTTcaatgtggagaagaggatgcaAGAGGCAGAGGAACAGCCCGAAGGGGCACAGTATGCCAGCAGCAACAGAGCCCATCACTCTGGTGACACGTCGGCCCTCGGGTCAGAAAACCCCTCCCACCCGCAGCCCGAACCCTGCCCCCAGACCGGCACTATCTCCTGGCAGGCCGCGATCCATGCTGCTCGTAACGCCCAGGGCGAGGCACCCCAGAGCATGAGCGCCCGCCCCCCTGTCCCTGGGGCCACACCCGCCCCGGTGGGCTCACTGTCACAGAGGAAGAGGCAGCTGTATGCCAAGAGCAAGAAGCAGGGCGGCTCCACCAACAGCAGACCGCCCAGGGCACTGTTCTGCCTCACCCTCAACAATCCCATCCGCAGAGCCTGCATCAGCCTGGTGGAGTGGAAACCCTTTGATATCTTTATACTGCTCTCTATTTTTGCCAACTGTGTGGCCTTAGCTGTTTACATCCCCTTCCCAGAGGACGACTCCAACTCCACCAACCACGACCTGgAAACAGTAGAATATGCCTTCCTAATCATCTTTACTATAGAGACCTTTCTGAAGATCATAGCGTATGGTTTAGTCATGCACCAGAACTCCTACGTAAGAAACGGATGGAACATGCTGGATTTTGTCATTGTCATAGTAGGGTTGTTCAGTGTAGTTCTGGAGGTGATAACCAAAGAGGGCGATGCCGGGGGCCAGGGGGGTAAGCCGGGAGGTTTCGACGTCAAGGCCCTCCGAGCATTCCGGGTGCTCCGCCCCCTCCGCCTTGTCTCAGGAGTACCCAgTTTACAGGTAGTGTTGAACTCCATCATTAAAGCCATGGTTCCTCTGCTCCACATCGCTCTGCTCGTCCTCTTCGTCATCATCATCTACGCCATCATCGGCCTCGAACTCTTCATCGGCAAGATGCACGCCACCTGCTACCTGGTGGGCACCGGTATTCTGGCCGAGGAGGAGCCTGTTCCGTGTGCGGTGTCAGGCCATGGGCGCCAGTGCAGGATGAATGGGACTGTGTGTAGGGAAGGATGGCACGGGCCCAATGGTGGCATCACCAACTTTGACAACTTCCTGTTTGCCATGCTCACTGTTTTCCAGTGTATCACCATGGAGGGCTGGACTGATGTTCTGTACTGGATGAACGATGCCATGGGTTCTGAGCTACCCTGGGTCTACTTCGTCAGTCTGGTCATCTTCGGTTCCTTCTTTGTTCTCAACCTGGTTCTGGGAGTGTTAAGCGGAGAGTTctccaaggagagagagaaggccaaGGCTCGTGGAGACTTCCAGAAGctgagagagaagcagcagcTGGAGGAGGATCTGAAGGGCTACCTGGACTGGATCACTCAGGCCGAGGATATCGACCCTGAGAATGACGAGGAGGGGGACGAGGAGGGGGGCAAACGCAATCCAAGCGTGCCTGCCAGCGAGACCGAGTCTGTGAACACTGACAACCCCAATGGAGAGGACGATAAGGCTAACTGCTGTGGACCACACTGTCAAAAAATTACTAAATCAAAGTACAGTCGGCGATGGCGTCACTGGAACCGGTTCTGCCGCAGGAAGTGTCGTGCTGCCGTGAAGTCGGTGTCTTTCTATTGGCTGGTGATCATCCTGGTGTTTCTGAACACGCTCACCATCTCGTCAGAGCACTACAACCAGCCTGACTGGCTCACGGAAGTACAGGATGTGGCCAACAAGGTTCTGCTGGCTTTGTTCACGTGTGAGATGCTGGTGAAGATGTACAGTCTGGGCCTGCAGGCCTACTTCGTGTCCCTGTTCAACCGCTTCGACTGCTTCGTGGTGTGCGGCGGCATCGTGGAGACCATCCTGGTGGAGCTGGCCGTCATGTCTCCTCTGGGCATCTCTGTGTTCCGTTGTGTCCGCCTGCTACGCATCTTCAAGGTCACACGCCACTGGGCATCTCTCAGTAACCTGGTGGCGTCGCTGCTCAACTCCATGAAGTCCATCGCTTCCCTGCTGCTTCTgctcttcctcttcatcatcatcttctCCCTGTTGGGCATGCAGCTCTTCGGAGGCAAGTTCAACTTCGACGAGACGATAACCAAGAGGAGCACCTTCGACAACTTCCCCCAGGCACTACTCACAGTGTTTCAGATCCTGACAGGCGAGGATTGGAACGCTGTGATGTATGACGGCATCATGGCGTACGGTGGACCCTTCTCATCGGGCATGGTCGTCAGCATCTACTTCATCATACTCTTCGTCTGCGGAAACTACATCCTGCTGAACGTCTTCTTGGCCATCGCCGTTGACAACCTGGCAGACGCAGAGAGCCTGAACACAGcccagaaggaggaagaggaggagaaggagaggaagaagagttcCAGAAGTGACACAGACAAGACCGAGGATCTGAAACCTGAAGGCCAGGATGAGGAGATCAAGCTTCCATTGGAGGAGGaagtggaagaggagaaggagcCGTATCCCACTCCAGATACTCCAGTTGGTGACGATGACGACGACGACGATGAGctcccggaggttccgattgggCCACGTCCTCAGAGGCTGTCGGACCACAGCGTCAAGGAGAAGACTCCGCCCATCCCTGAGGGCAGCGCTTTCTTCATCTTCAGCAACACTAACCTAGTCCGGGTGGCCTGCCACAAGCTGACCAACCACCACATCTTCACCAACCTCATCCTGGTCTTCATCATGCTGAGCTCTGTGTCTCTGGCTGCTGAGGACCCCATACGCAACTTCTCCGCACGCAACATTATCCTAGGCTATGCAGATTATGTCTTCACTAGTATGTTTACCTTTGAGATCCTGTTGAAGATGACAGCGTTTGGGGCTTTCCTCCATAAAGGAGCCTTCTGCAGGAACTACTTCAACCTGCTGGACCTACTGGTGGTGGGAGTCTCTCTGGTGTCCTTCGGCATTCAGTCATCCGCCATCTCTGTGGTGAAGATCCTGCGTGTGCTGAGGGTGCTGCGGCCCCTGAGGGCCATCAACAGAGCCAAGGGCCTCAAGCATGTGGTCCAGTGTGTATTTGTGGCCATCAGGACCATTGGTAATATCATGATCGTCACCACGCTGCTACAGTTCATGTTCGCCTGCATAGGAGTGCAGCTCTTCAAGGGCAAGTTCTATCGCTGCACAGACGAGGCCAAGTCCAGCCCAGAGGAATGCAAAGGCACATACATTCTGTATAAGGATGGCGACACAGTGTTGCCTGCGGTCAGGGAGAGGATCTGGTACAACAGTGACTTCAACTTTGACAACGTCCTCATGGCTATGATGGCTCTGTTCACCGTCTCTACATTTGAAGGCTGGCCTGCTCTGCTGTACAAGGCCATCGACTCCAACAGAGAGAATATGGGTCCCATCTACAACTACCGCGTGGAGATCTCCATCTTCTTCATcatctacatcatcatcatcgccTTCTTCATGATGAACATCTTTGTCGGTTTCGTCATCGTCACCTTCCAggagcagggagagaaagagtacaAGAACTGTGAGCTGGACAAAAACCAGCGTCAGTGTGTAGAGTATGCTCTGAAGGCTCGTCCACTGCGGAGGTACATCCCTAAGAACCCCTACCAGTATAAGTTCTGGTATGTGGTTAACTCCACTGGCTTTGAGTACGTCATGTTCGTTCTCATCATCCTCAACACACTGTGTTTGGCGATCCAGCACTATGGCCAGTCCCACCTGTTCAACTACGCCATGGACGTCCTCAACATGGTCTTCACTGGCGTCTTCACCGTGGAGATGATCCTCAAACTGATTGCCTTCAGACCCAGGGGGTATTTTGGAGACGCCTGGAACGTCTTCGATGCCCTGGTGGTGATCGGCAGCGTAGTCGACATCATTCTCAGTCAGGTAGATaacACAGAGGACAGCGCTCGCATCTCCATCACATTCTTCCGCTTGTTCCGAGTCATGCGATTGGTCAAGCTGCTCAGCAGAGGGGAGGGCATCCGAACGCTCCTGTGGACCTTCATCAAGTCCTTCCAGGCTCTTCCCTATGTTGCCCTCCTGATAGCCATGCTATTCTTCATCTACGCTGTTATCGGCATGCAGgtgtttggaaagaTCGCCATGGTAGACGGCACACAGATAAACCACAACAACAACTTCCAGACCTTTCCTCAAGCTGTCCTGATGctcttcagGTGTGCTACAGGCGAGGTGTGGCAGGAGATCATGCTGGCATGTCTGCCAGGGAAGCTGTGTGACTCCGAGTCAGACTACAACCCCGGAGAGGAGAGAACCTGTGGCAGCGGATTCGCCATCATCTACTTCATCAGCTTCTACATGCTCTGCGCCTTcctgATCATCAACCTGTTCGTGGCTGTCATCATGGATAACTTTGACTATCTGACGCGGGATTGGTCCATTCTGGGTCCTCACCACCTGGATGAGTTTAAAAGGATCTGGTCTGAGTACGACCCTGAGGCTAAGGGCAGGATAAAGCATCTGGATGTGGTGACCTTGCTGAGACGCATCCAGCCTCCTCTAGGCTTCGGCAAGCTGTGTCCACACAGAGTGGCCTGCAAGAGATTGGTTGCCATGAACATGCCCCTGAACAGTGATGGCACGGTCATGTTTAACGCCACCCTGTTTGCCTTGGTGAGGACCGCTCTGAAGATCAAGACCGAAGGCAACCTGGAGCAGGCCAATGAGGAGTTGCGAGCGGTCATCAAGAAGATCTGGAAGAGGACCAGCATGAAGCTGCTGGACCAAGTGGTGCCCCCTGCTGGCGATGACGAGGTAACCGTGGGGAAGTTCTATGCTACCTTCCTGATACAGGATTACTTCAGAAAATTCAAGAAACGCAAAGAGCAAGGCCTGGTGGGAAGAAACTCATTCACCAGCCTGAACTCCACCATCGCCCTCCAGGCCGGTCTCCGCACACTGCATGATATTGGGCCTGAAATCCGCCGAGTCATATCATGTGACCTGCAAGACGAGGGCCTTGTCGACATTAACGCAGAAGACGGCGAGGAGATTTACAGGAGGAACGGCGTGATCTTCTCCAACCACACCAATCACGTTAACGGGGACCACCGGGGTTCCGCCCACCAGACAAACGTCACTCAGCGGCCCCTCCAGGTCCCTCCGCCTTCCTGCCACGCCTCCGTGGATCCCTCCCAGGTCGGCTCTGAGGAAAGGGCAGGCGAACCCCACTGGtacaactactactaccccaAATCCCCCATATCCTCAAACGCCAACCTTAACAATGCCAACGTGCACCCTGTGCCCTCCCTGACAAACGGGGGGCAGCGCCGCTGTCTTCGCCGTGAGCACCCGTCTGCTAATGGGGCACCCTCTTCCAGCTCGCACCGCAAGATTGTTGACTTCGACACCCACACCACGGTCCAATCTGCGAGGTCAGATTCAGGGGGTGTTCGCTACCCTACCGTTCGTAGAGAGGAGCCGGGGAGGGCAGACAGTGATGAAGACAGGGGCTCTGGGGAATACTTCAGCGGGGAAGAGTACCAGGAGGATGATATCATGTTGCACAAAGACAGGATGTCCCGTAAGGAGTGTCAAGACCATCAACCGGACAGTCTCTGTGATGACCACCAGCAACCCATTTACCAGGATGGTGGGCGGTCGCCGAAGCGATGGTTTCTCCCCTCTACACCCCAGGCCCTCCACAGACCCTCATTCAACTTTCATTGTCTGCGGAAACAAAGCAGTCAAGGCGATGACACCCCCTTGACCCCTTCCGTTCCCCTTCGAACAGCTCTACCCCTGCATCTGCTGCAGCAGCAGGTGATGGCGGTGGCTGGCCTGGACTCCAGCAGAGTCCCGCGTCTCTCTCCGTCACGCTCTCTACGCTCCTGGGCCACGCCCCCCGTCTCCCCCAGCAGCAGGGACCACTCCCATTACTACACACCCCtcatccagGTGGACTGGCGTGGGCTGAGCAGTGTGAGTAGCACCCCTGGCTCTGTGAGAAGGAGCACCTGGTACACTGACGTCCAAGAAGCCCCCCTAAGCCGTACTTACTCCCCCTTACAGCTCCAGATCCCACCTGAATATCGCAGGCAGTACCACCAGAACAGAGGCAGTGCTAACAGCCTAGTGGAGGCTGTGTTGATTTCAGAAGGCCTGGGGAAATACGCCAAGGACCCCAAGTTTGTGTCGGCGACCAAGCACGAGATCGCGGACGCCTGCGAGATGACCATCGACGAGATGGAGAGTGCCGCCAGCAACCTGCTGAACGGCAGTATGGGTAATGGGGCGGGGACAACGGACACAGTGACTGGCACGAGCCTCATGGACCGCAATCTCGAGGACTACAGCGATGAGGAGCCGGACACGTGCGGGAAATACGAGGAGGATCTGACTGATGAGATGATATGCATCAGCACCCTATAGCAGTCACTCACACTAGACACAGGCTGCGTctgacatggcaccctattccctatagtgtgcttctagtgcactatatagggagcgaTGTGCTTTTTGGATGCAGCCAACAaccatacaaacaaacaaacgagAACAAAGTGCCTTTCTTTCTGtggaatgaatggatggatgaaaaCACTGCCAgctggagaggagtggaggggatgGAGTGGCACGCCAAAGATCCAACTTCAGAGGAGTCCCGCCCCTTCCTCTCCGTCTGTTTTGCAGCACCCAATGAAACAGAGAGTGAAATATAAGAGGGGGTTGTCCCAAAGGGGATGCAGTAATGTTGGGTTTCCTCCTCAACGACTTCATACAGAAATCACATATCAGTGAAATTAAGTTCCAGTCCTCAGCCATATCCCCCCCTGCCTCCCGTTCGCCTTACCGTCTGCACAAAGACACTAAGAGTAGTCAATCATAGATGGAGAGTAGCGGCCATTTTACAGACCGCATTTTGAAACTGTGAACAACCAACATGAGAAAACGGTGTATTCCAATATCACACTCACTCCTGCCCAACCAATCACTCTTCAGGGATGACTTAGCAGCCATAATATTTTAATGAAAGGACAATCTATTAAATTGTAGGTGTATTTTAAACCCTGAGAAAAAGATATTATTTGAAAGAGATGCTTTATATGTAGTTATTTATGGATCGTTACAGGTATAACATATTCCCCATGCCTATGAAATAGATAAGTATTGTTTTATTTGGAATGAATATGAAATGATATTTGATTATGTTTAGCCTTTTTTCTCTCACTACTTTTAAGGGGAATCATGTTGATTTAGAATGAATATGATGTCAAAGAGGTACTTTATCTCAAGTGCGCGTAGTTTGTTTCTACAGAAGTAGGGTTTGCCATTTACCAGCTTAGCTCACTGCCAACAGAAAATAATTAGTAACGCCAGgttagtgggtttgattcccaggatCACCCATACGTTCAAATGTATGCACGCAATGACTAAgacgctttggataaaagcggcTTCTGAAGGGCATACGTAAGGATAACTCGGTACTATCATGGAAATGTGTTTCTGTCCTCCCAACCTATAATGTGCAACAAAAGTGctctttcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04851 CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914153 lncRNA upstream 17566 40205403 ~ 40205624 (+) True G803325
TU914152 lncRNA upstream 17934 40204910 ~ 40205256 (+) True G803324
TU913800 lncRNA upstream 33312 40184041 ~ 40189878 (+) True G803026
TU913799 lncRNA upstream 38260 40184041 ~ 40184930 (+) False G803026
TU913790 lncRNA upstream 50186 40170282 ~ 40173004 (+) True G803017
TU914232 lncRNA downstream 19870 40348725 ~ 40348955 (+) True G803393
TU914240 lncRNA downstream 37992 40366847 ~ 40367047 (+) True G803401
TU914241 lncRNA downstream 39959 40368814 ~ 40369045 (+) True G803402
TU914185 lncRNA downstream 79114 40407969 ~ 40410296 (+) True LOC110532069
TU914320 lncRNA downstream 180295 40509150 ~ 40544148 (+) True G803475
XM_036987971.1 mRNA upstream 59044 40152702 ~ 40164146 (+) False mybl2a
XM_036987972.1 mRNA upstream 59044 40152702 ~ 40164146 (+) False mybl2a
XM_036987973.1 mRNA upstream 59044 40152702 ~ 40164146 (+) False mybl2a
XM_036987974.1 mRNA upstream 59044 40152702 ~ 40164146 (+) False mybl2a
XM_036987975.1 mRNA upstream 59044 40152702 ~ 40164146 (+) True mybl2a
XM_021615676.2 mRNA downstream 29930 40358785 ~ 40371338 (+) True LOC110532067
XM_021615678.2 mRNA downstream 46417 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 46417 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 78957 40407812 ~ 40410397 (+) False LOC110532069
XM_036987986.1 mRNA downstream 175797 40504652 ~ 40574256 (+) False LOC110532072
TU913576 other upstream 411165 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 411165 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 430857 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 432788 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 582321 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 57910 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 114041 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 138773 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 692081 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1106029 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile