RNA id: XM_021615676.2


Basic Information

Item Value
RNA id XM_021615676.2
length 1945
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110532067
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40358785 ~ 40371338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCCTCCTCTGTGAAGTGCGCCTGTGCACAAACCCATTCTGTCTGTATTGATGTTGCATGTAATTGTGTGGAGTAAAGAATGACATAGCCTACTGTCGGAACTAAATTACCTACCTAACTCACATTCGACTGAAAATGTATCAACTACAGTTATTGCGCGTGTTTTTAAATGAGCGTTTAACCGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGTGGATCACACCAGAGATAAAACAACGTAGAATAGACTCCCTGCAGCTCTCTCTCACAGTATCTGAAGAGGAGTTTCTCCCTGAGCAGCAGCACTGTGAGCCGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCCGAGCCCAcacagattaaagaggaacaggaggaagtcAGGACCAGTCAGAAGGAAGAGCAGCTTCAAGGGCTGGAGGCTGATATCATAGAGTTCCAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACTGTGGAAAACAGAGAGTGTGACTCTATACCAGTGGATCTCAAACCTTTTGGCACTGTGATTCACCCAAAGAGTCTCGCCATTCCCCGTAACCCTCCAGATAATGATAGCAATGCCTCCAGCCACAGCTCAGCCATAAGCAGAGACCCAGTAGGACTTGACAGCAGCCCACAATTGGATTCCAGCCCACCATTGGAGAAACGTTCTTCCAAACCCAGCATGACGTCTAGAAAAACTCACCGCTGCTGTGACTGTGGTGAAATGTTTGCTCCAAAAGCTGACCTGCTGAGTCATGTAACTCTAAACAAGAAGAGACCCAGGGAATGCAGCTTCTGCAAAACCTGTACACTGAAGGCCCATGTCCGACTCTGTCACATGGAGAAACCCTGCACCTGCCCTGATTGTGGCAAGTCATTCAAATACAAAGGAGATCTGTCCAGGCACATGaggattcacacaggagagaaatattttagctgtggtgactgtgggaaaagtTTCAGTCTCAAGGGGAACCTAATGAAGCATAAACTGACTCACACAGGAGCaaaaccatttagctgtggtgactgtgggaagagcttcaatcgGAAGGAGAACCTAACCATGCATATACgtactcacacaggagagaagccatttAGCTGTGTcgactgtgggaaaagcttcagtCTCAAGGGGAACCTAATGAAGCATAAACTGACTCACACGGGAGCaaaaccatttagctgtggtgactgtgggaagagcttcTCTGTCAAGGGGAATCTAACCACGCACAAGCTGACTCACACAGGGGAAAAACCATTTAcctgtggtgactgtgggaagagcttcaatcgCAAGAAAACCCTAACCATGCATACgtattcacacaggggagaaatcatTTAACTGTAGTGGCTGGGAAAAGCTTCAGCGTCAAGAGGAACCTAATTGTGCACAAACGgactcacacaggggagaaaccatttagctgtggtgactgtgaGAAAAGCTTCAGTCGGAAAGGGGACCGAGAGGGGCTCATACTGACTCAAAcaagaaataaacacttttaatGTGGTGACTCCAGGAAAGATTTAATGTCAAGGGGAATCTAACCACTCATAAACTGACAAAGGAGTGAAACAACATGGCTACTCAGTCTGGTAAAAGCACGTCCACAAAGAAACTGAAGAAAACTGAAAGAAAAATGTAATTAAGACATAGAGATCTGTCAGTAGATGGCAATAAAAAGGCAGGATGTGGACAACACTTTTAGGAAAAGCAAAGCAACTCTGGATCATTAATGCTGTGGGTTTCAGATAAATAGATCTATAATGGATACTTTTGTAATACGTatgtaaataaagtttgatttaacTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914232 lncRNA upstream 9830 40348725 ~ 40348955 (+) True G803393
TU914153 lncRNA upstream 153161 40205403 ~ 40205624 (+) True G803325
TU914152 lncRNA upstream 153529 40204910 ~ 40205256 (+) True G803324
TU913800 lncRNA upstream 168907 40184041 ~ 40189878 (+) True G803026
TU913799 lncRNA upstream 173855 40184041 ~ 40184930 (+) False G803026
TU914185 lncRNA downstream 36631 40407969 ~ 40410296 (+) True LOC110532069
TU914320 lncRNA downstream 137812 40509150 ~ 40544148 (+) True G803475
TU914348 lncRNA downstream 209646 40580984 ~ 40581239 (+) True G803503
TU914360 lncRNA downstream 221204 40592542 ~ 40593479 (+) False G803508
TU914358 lncRNA downstream 221255 40592593 ~ 40593479 (+) True G803508
XM_036987977.1 mRNA upstream 29930 40223190 ~ 40328855 (+) True LOC110531171
XM_036987971.1 mRNA upstream 194639 40152702 ~ 40164146 (+) False mybl2a
XM_021615678.2 mRNA downstream 3934 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 3934 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 36474 40407812 ~ 40410397 (+) False LOC110532069
XM_036987986.1 mRNA downstream 133314 40504652 ~ 40574256 (+) False LOC110532072
XM_036987987.1 mRNA downstream 176170 40547508 ~ 40574256 (+) True LOC110532072
TU913576 other upstream 546760 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 546760 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 566452 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 568383 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 717916 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 15427 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 71558 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 96290 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 649598 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1063546 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile