RNA id: XM_021615677.2


Basic Information

Item Value
RNA id XM_021615677.2
length 2112
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110532068
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40375272 ~ 40393967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTTATTTATTCTTGCCTGCTTCACCGTCGGTTTGATTTAGCATACCTTGTTAGAAATAAAGAAAGATCAAGTAGCTCAACTGAAGAGGCTACCTAACTCTCATTTGACTGAAAATGTCTAAACTAGATTTGTTGCGTGTGTTTTTAAATGAGCGCTTAACTGCGGCTGCGGCGGAGATTTTCGGGGCCGTTGAGAAAACGGTAGTGGAGTATCAGGAGGAGAATCATCGGCTTCGTGGACTGCTGCGGATTACACCGGGGATAAAACTATGCAAAAGAGactccctgcagctctctctcgctgtctctgaaGAGGAGGTTCCCTCTGAGCAGCAGCACTGTGAGCATGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCTGAGCCCAcacagattaaagaggaacaggaggaagtcAGGACCAGTCAGAGGGAAGAGCAGCTTCAAGGGCTGGAGGCTGATATCATAGAGTTCCAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACCCTTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACATTTTGGCACTGTGACCCACCTAAAGGGTTTTGATATTCCCTGTGACCCTCCAGATAATCAAAGCAATGCGTCCAGCCACAGCTCAGCCAAAAGCAGCGACCCACTAGGACATGACAGCAGCCAACCATTGGATCCGAACCTACCAATGGGGGAACATTGTTCCAAACCCAGCACCATATCTATAAAAGCTTACCGCTGCCGGGACTGTGGCAAAACGTTTCCTCTGAAAGCGGGCCTGCAGAGGCATGTGAATCTCGACAAGAAGAGACTCAGTGAATGCCACTTCTGCAAAAAACAGTACAACTCCACCTGTAAACTGAAGGCCCATGCCCGACTATGTCACGGCGGGAAACCCAGCACCTGCCCCTTCTGTGGCAAGACCTTCAAACACAAAGGACATCTGTCTAGGCACATGagtattcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcAGAAGGGGGGCCTAGGAAGACATAtactgactcacacaggagagaaaccttttagctgtCATTTTTGCTGTAAAAGCTTCAGGCAGAAGAGGGATCTAAGGAGGCATATActgattcacacaggagagaaaccatattgCTGTGGCGACTGCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATATGCGGACTCACACAGGAGAGTAGAGATTTATCTGTGGTGACTGCGGGAAAAGCTTAAATTGTAAGGAGAAGCTGAGAATTCATATATGGACTCTCACAGGGGAGAAATCATTTATCTGTGATGACTGCTAGAATTGTTTAATTACGAAGACTAAGTGCTCTATTCAATCAGTATTTTGGAAGTTCAGCGTGATTGCCATTACATTTCAATGTTGCTGAGTTAGCGGAGACTGTATTCACGATAAACACTGCATACTCAATCAGAATTTACCTTAACATTTCTATTGtgcaatctgtaacgcttcagcgatATAGAGCCCTAACCTAACATATTTACGGACTCACACGGGAGAAATCATTTAGCTGTGGTGACCGCGGGGAAAGCCTCAATAAGAAGGGGGACCTAACCAGGCATATACTGACACACTGGAGAGATATCACATGGCTGCCCAGTTTGTGGTAAAAGAGTCACTCAGAAGGTAAACCTACTGAAGCATGGAAAAAGAACATACAACAAGACAACAAGAACAAGATAAACTGAAAGAAGGAAGAAAATGGACTTAGATGTTCTGTCAGAAGATGGGAATAAAAATCAACTGTGGATCATTCATGCTGTGTATTTTAGAGAGATAGATACATTATGGATttacttttgtaaaatgttctatGTACATAAAGTTTGATAGGATTTAAATGATTAAGAAATGAACCAGGAGTAGTGCATTTATTATGGGAATCTCACCGATCTACTGTTCTGTTGATGTTTTCACCTTATTAGAAACCGGAAGATCTGGATGggaaaaatatacactgctcaaagaaataaagggaacactaaaataacacatcctagatctgaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914241 lncRNA upstream 6227 40368814 ~ 40369045 (+) True G803402
TU914240 lncRNA upstream 8225 40366847 ~ 40367047 (+) True G803401
TU914232 lncRNA upstream 26317 40348725 ~ 40348955 (+) True G803393
TU914153 lncRNA upstream 169648 40205403 ~ 40205624 (+) True G803325
TU914152 lncRNA upstream 170016 40204910 ~ 40205256 (+) True G803324
TU914185 lncRNA downstream 14002 40407969 ~ 40410296 (+) True LOC110532069
TU914320 lncRNA downstream 115183 40509150 ~ 40544148 (+) True G803475
TU914348 lncRNA downstream 187017 40580984 ~ 40581239 (+) True G803503
TU914360 lncRNA downstream 198575 40592542 ~ 40593479 (+) False G803508
TU914358 lncRNA downstream 198626 40592593 ~ 40593479 (+) True G803508
XM_021615676.2 mRNA upstream 3934 40358785 ~ 40371338 (+) True LOC110532067
XM_036987977.1 mRNA upstream 46417 40223190 ~ 40328855 (+) True LOC110531171
XM_036987973.1 mRNA upstream 211126 40152702 ~ 40164146 (+) False mybl2a
XR_002474801.2 mRNA downstream 13845 40407812 ~ 40410397 (+) False LOC110532069
XM_036987986.1 mRNA downstream 110685 40504652 ~ 40574256 (+) False LOC110532072
XM_036987987.1 mRNA downstream 153541 40547508 ~ 40574256 (+) True LOC110532072
XR_002474802.2 mRNA downstream 372315 40766282 ~ 40768598 (+) True LOC110532075
XM_021615690.2 mRNA downstream 522143 40916110 ~ 40918983 (+) False LOC110532080
TU913576 other upstream 563247 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 563247 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 582939 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 584870 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 734403 39639254 ~ 39640869 (+) True spryd4
TU914281 other downstream 48929 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 73661 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 626969 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1040917 41434884 ~ 41435423 (+) False LOC110532096
TU916102 other downstream 1627892 42021859 ~ 42024403 (+) True LOC110532114

Expression Profile