RNA id: XM_036987987.1


Basic Information

Item Value
RNA id XM_036987987.1
length 5741
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110532072
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40504652 ~ 40574256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGCGAGGACTCTACCTTTACCATTCTGTCGGTTCTTCTGAAGGATTTTCTTATcccacctctggggtttgtgtgGATTCCATACAGTGTATCGGAGAGTGTGTGGGggtatgtgtacatgtgtgtgaaaTGGTGTAAACgacagtgtgtgtgaatgagtcaATAAGTGTGTATGCGCACCGAGAAACAGAAGGAGGAGCACAGATTTTGGTCCTGGAATAGAGAGACAACCTGTTGGAAAGTAGTGTTGAGGACGTATCCATGGGACACGTTGTGCTTTGGACCATTACTGGGTCAGGTGGACGCTGAGAGGGAATGCGGTTGCCCTGGATACAGAAGGAGAGGTTCCAGTGCCACTGTGAGAAGCTTTTTCAGTCCCGTTGGAGCTGAGAGGTGTGCAGTACGACAGACGCAGAACGGGGGAACGCCACACAACACCCCGAAGGCTGACATCCGTTTTGGAGAGGAGAGCGACGACAACTAGCCGTCTGTTGTTACGACAACAACCAGACCCATTTCAACCCGAGGCGTGCCAGGCTAGTGCCAACCCCAGGACACCATGATGATGGCAGTGACGATGATGACGACGTGGGGCTCCCTGCTCCTCGTGGCCTCCCAGGTCTCATCCAGCGGAATCCCCAAGACCAGCgcctcctcttcaccctccttctcctcacacccatcctcctcttcctcatcctcccctcGCATGAAGCTCTCCTACAAAGAGCTGCAGCAGTTCCACGGCGTGCGCCGGTTCGAGCTGGAGCGTTCATGCTGTTTCAGCGCCCTGTTGCTGGACGAGGAGAGGGGACGGCTCTTCGTGGGCTCACGCAACTTCCTGCTGTCACTCAGCCTGGATAACATTGCCAAGCAGGAGCACAAGATCTACTGGCCGGCCCCTGTGGACTGGAGGGAGGAGTGTAACTGGGCAGGAAAGGACATCAACACAGACTGTGTGAACTACGTGAAGATGGTCCACCACTACAACCGCACTCACCTGTACACCTGTGGAACCGGAGCCTTCCATCCCACCTGCGCCTTCGTAGAGGTGGGACAGAAGATGGagGACCACGTGTTCAGGATCGACCCGTCCAAAATGGAGGATGGGAAAGGGAAGAGTCCATACGACCCCCGTCACCCTGCAGCCTCGGTGCTGATAGGTGACGAGCTGTATGCGGGCGTGGCCACTGACCTCATGGGTAGAGACTTCACCATCTTCCGCAGTCTGGGGGGACGACCCTCCATTCGCACCGAACAACACGACTCACGCTGGCTCaacgAGCCTAAGTTTGTGGGTTCGTTCTGGGTGCCGGAGAGTGAGAACCCAGACGATGATaagatcttcttcttcttccgggAGACGGCGGTGGAGGCTCAGGGCCTGGGGAAGTCCACCTACTCCCGTATCGGACAGCTCTGCAGGAATGATATGGGTGGCCAGCGTAGTCTGGTCAACAAGTGGACCACGTTCTTGAAGACTCGTCTCATCTGTTCTGTGCCGGGCAGTGACGGCAGTGACACGTACTTTGACGAGCTCCGGGATGTGTTCCTGCTGCAGACCAAGGACAGGAAGAACCCTCTGGTCTACACTGTCTTCTCTACCTCCAGCAGTGTATTCAAGGGATCAGCCGTGTGTATCTACACCATGAATGACATCCGCAGGGCCTTCTTGGGGCCCTTCGCCCACAAAGAGGGTCCAAACTACCAGTGGGTCCCCTTCCAGGGCAAAGTCCCCTACCCACGCCCTGGCATGTGCCCCAGCAAGACATTCGGCAGCTTCGAGTCCACCAAGGGTTTCCCTGACGACGTGATCCAGTTTGCCCGTCACCACCCTCTCATGTTTAACCCCGTGTACCCCCTGAACCGCCGGCCCGTCTTCCTGAGGACCAACGTAGACTACAGCTTCACCCAGATCGCCGTGGACCGGGTGGGCGCCGCAGACGGGCATTATGATGTCATGTTCATTGGCACAGACAAAGGGACGGTGCTGAAAGTGATCTCTGTACCGAAAGAGAGCTGGAACAACATGGAGGACCTGCTACTGGAGGAGCTAGAGGTGTTCAAGGATGCCTCATCCGTCATCAACATGCAGATATCCTCAAAACGGcaACAGCTGTATGTGGGCTCAGACACGGGTCTGGCCCAGGTTCCTCTGCATCGCTGCAGTATCTATGGGAAGGCCTGTGCTGAGTGCTGCCTGGCCAGAGACCCCTACTGCGCCTGGGACGGCACCTCCTGCACCCGCTACCTACCCAACACCAAGCGGCGTTTCCGTCGTCAGGACGTGAGGAATGGAGACCCCAACACCCTGTGTTCAGGAGACCACCACAAGCACCGGGTGGCAGAGAGGAGGCTGTTCGGGGTGGAAGGGAGCAGCACCTTCCTGGAGTGTATCCCCAAATCCCTGCAGGCCAGAGTGACCTGGACCTTCCAGAAACAACCCCACAATGCCAAGGAAGAGCCGCGTCTGGATGACCGTGTGCTGCAGACAGAGCGGGGGCTGTTGGTGAGGAGGGTACTGAAGCGGGATGTGGGCCTCTACCAGTGCCACGCCATGGAGCACGGCTTCACCCAGACCCTACTGGGCATCACCCTGGAGGTagtaccctcctcctcctcttcctccccgcCCGCCGACCCTCTCCTTCGATTGGACCCCCGCAGCGGAGGCGGCGGCCCACCTTCCACCAATCAGAAGCTGTGGTACCGGGACTTCATGCAACTGGTGGACCACCCGAACCTCAGCACCGTGGATCAGATCTGTGAGCAGGTGTGGGCGCGCAAGAGCGCCCAATCGGACAAGAGCTTCCCGTCTTCTCCCGACAAACAGGCCCCGCCCATCGGTCCCGTGGTCCGTCCCCCTAACAAGAAGTGGAAGCATCTGCAGGACATCCGCAAGGGGAGGAACCGCCGAACCCACGACGGGAAACCCTCCCCACGAGCACCACGCAGCGCAGGGGagtgacaacagagagagaggagagaaagaaggagagagactgagggtggcgagagagggaagagagggaagagagggaagaggaaaagagagagacagagactgatagagaCCAAGGACTTCTGGAGGGTGTCAACACATACACAGCACCTCCTTCTTTGTGAATATTTATCTTCCGACACCCCACTAGCTACTGCCCCATGATGCTTCActctgccctgacccctgacccctgaatAACTTGTACCGCCCCTTATTATTCCACCTATCTTAattctctgtcccagctctcaaTCCCTTTGGGTGTACTCTCCTGGAGAACTTCTGATGGAGACCTCACCTCTACAGAACAGACTGAACAGAGTCCCCAAGTTAAAAGATGGCTCAGTGTATGTCACTCAATCTCTCAACTGGAATTACAACTGGCTCGTAACCGGAATATCCGAATGGaaaaagacacacatacacaccacaggaggttggtggcaccttaattagggaggacgggctcgtggtaatgactggagtggaatcagtggaacggtatcaaacacgtggtttccaatAGTTTGACGCCATTTCATTTGCTCCGTTTCCGGCCGTgtttatgagccgtcctcccctcagcagcctcctgtgatacaCGTTTACAACCCGAGATGACAGTACCTTTGATGACACGGACTACAAATTGTGAGATGGGACAAAAACAATGGGCTCCGCAGACCTCCAAACGCACATTGATCAACTTAGGTATAATCACATTTCACGTGTTTTGCAAAGAGAGCATCACGTGGAAGTGTGCTTTGTGACAGATGCAGGCTTTGATATTCTTTTTTTTGGTCCAAACCACTACAGATAGGAGAAAGCACTACTGTCATTCCAGGGTATAGAGAGAGCTGTTACAATGAGGTGAGATtctgaagcagagagagagagagagagagcgtacagGATCAACACAATGGTTCCATTGTGATTCTATTTTACAAAATGGCTGACAAGGTAGAGGAAGTGGGCGATGTTCTACCTGTGTGTTTATGGGGTGACAAGGTAGAGGAAGTGGGCGATGTTCTACCTGTGTGTTTATGGGGTGACAAgaaaaatgttttgtgttttatTTAGTCATTTATTTAAATGATCTGTGTGTATTTTCTGACTCGGATGACTTGTGTTGTGTGCTGACACATTGACATGGGGGGAGATGGTTGAGATGGTTCAAGTGACAGGCTGCACAACATCAATGTGGACGTGGCCAAACAATAGTGGGCTTTGAATACGACGTCCCAACTTTGGGCAAAAAGCATGATATTTATATGTGAAAAGAAAACATCTCGATTTTTTTTTATTCCAAATGGTACATACATGGTTCTTTTAGGCTTACACTGTTTGCCTAGGTAAATGatcagtagctgtgtgtgtgcgtgcgtgcgtgcatgcatgcatgcgtgcgtgcgtaaaTAAACATCCCTCCCTCCTGTGCTGTGTCTGTAGGCCCATCTCTGAGTGTCAATTTTACAGCATGTCTTTGATGCCTTCAGTTCAGCGAAACACATTTGTCCTCGGTGAAATGGTGTGAGTAGATCGCCACCTAGCTTCCTTTCCATGTATAGGCCTGGTCCGTTGACTTCCTACGGTACGATTCAATACAGTCTGTTGTCGGCTTCTTAAAATAAAAACGCGCTTTAAATGTTTCTCCTTTTACCAGTGAAGTCTGTGAGAGCGTACAGATGTAAGGAATCCCGCCTTTTATTTATAGCTGCTTAATAAAGGTGTAATTATTAACTTTTGAACGACTGAGGCCAATAAGTTAGGTGGGCTGTAGTTTTGTGCTCTCCAATTGCATGACCAAGGTTAGGGACTAGACGGTGCACAATGGAGACTTTGGCTGCCTATCTGAATGGCActcagggcccatagggtcctggtcaaaagtagtgcaccatatagggaatagagtgccatttgggagacaccCTTTGAGAGGCGAGAGGGTCTTGTGTTCAATATGTTCAATATGGTTATCCTATGTATTCATGTGCACAAATAAGCTGATATGTTGTGGtggatattttttttcttttcatGTAGAGACTTGGGGCTCTATTGAATCTGTATTGATGAAGCGTTACAGAATGCGCGACAGAAACCTAAAGGCGATTTCCAATTGAGGTGACAGTGTTTACTGTGAACGCAGTCTCTGCTAATGTGGGGACGTTGCTTTTAAATTGAAATCAAGCTGTCACGCTAAACTACAGCCTTACCGATTGATTGGAGCCCTTGCAGTTGTACCATACACGTTCTGCAAAAGCTATCATCATTCAAAAAAACACTCTAAATGTTGATCCGGTTGTCCAATTAGCATCATTGTTCTTCACGCTGCCCTCCAACCGCTGATCCTTTCTATTCCATGCTATGTTACGCAccccaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtttggaggaaagGAGAGCTCTTTACATTTTGGCTTAGGAGGAGAGGTAGTCTGTAGAAACAGTTCAAAGTTCAGAGGCCAAAGTTGACATGGTGCACTGTATTACTTCCAGAGTTCTTTGTGGATTGTTGTGCCGGATTGTTTTTGATTAACACAATAAAGTGCCCAGTTACTTTA

Function

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914320 lncRNA upstream 3360 40509150 ~ 40544148 (+) True G803475
TU914185 lncRNA upstream 137212 40407969 ~ 40410296 (+) True LOC110532069
TU914241 lncRNA upstream 178463 40368814 ~ 40369045 (+) True G803402
TU914240 lncRNA upstream 180461 40366847 ~ 40367047 (+) True G803401
TU914232 lncRNA upstream 198553 40348725 ~ 40348955 (+) True G803393
TU914348 lncRNA downstream 6728 40580984 ~ 40581239 (+) True G803503
TU914360 lncRNA downstream 18286 40592542 ~ 40593479 (+) False G803508
TU914358 lncRNA downstream 18337 40592593 ~ 40593479 (+) True G803508
TU914402 lncRNA downstream 93026 40667282 ~ 40668064 (+) True G803542
TU914423 lncRNA downstream 143096 40717352 ~ 40717606 (+) True G803563
XR_002474801.2 mRNA upstream 137111 40407812 ~ 40410397 (+) False LOC110532069
XM_021615677.2 mRNA upstream 153541 40375272 ~ 40393967 (+) False LOC110532068
XM_021615678.2 mRNA upstream 160449 40375272 ~ 40387059 (+) False LOC110532068
XM_021615676.2 mRNA upstream 176170 40358785 ~ 40371338 (+) True LOC110532067
XM_036987977.1 mRNA upstream 218653 40223190 ~ 40328855 (+) True LOC110531171
XR_002474802.2 mRNA downstream 192026 40766282 ~ 40768598 (+) True LOC110532075
XM_021615690.2 mRNA downstream 341854 40916110 ~ 40918983 (+) False LOC110532080
XM_021615697.2 mRNA downstream 507196 41081452 ~ 41087171 (+) True si:dkey-72l14.3
XM_036986945.1 mRNA downstream 678410 41252666 ~ 41363977 (+) True LOC110531178
XM_036988011.1 mRNA downstream 849342 41423598 ~ 41452922 (+) False LOC110532096
TU914302 other upstream 79506 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 97569 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 158456 40386765 ~ 40389052 (+) True LOC110532068
TU913576 other upstream 735483 39810327 ~ 39812025 (+) False G802830
TU914604 other downstream 446680 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 860628 41434884 ~ 41435423 (+) False LOC110532096
TU916102 other downstream 1447603 42021859 ~ 42024403 (+) True LOC110532114
TU916494 other downstream 1757837 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 1771920 42346176 ~ 42348786 (+) True G805600

Expression Profile