RNA id: XM_021615682.2


Basic Information

Item Value
RNA id XM_021615682.2
length 2486
RNA type mRNA
GC content 0.54
exon number 22
gene id zgc:136971
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40731121 ~ 40743693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAGCGCCATTAATCACTTCCTTTGTGAAATCCTACAAAATGTGTTGCTGCTGCCGCCTTGCGTTTGGTCTCTTCCATCAGCCCCTGTATGAAATGGTATCGGCCGTCGTGTCGACATGGAGTTCCTGGCACGAATGGAACCCGATGCTATCAGCACTTTGTACCGTGAATATAGTGGGTATCCCACCCCTATTTCTGCCTTCGTGACGGCGAATGACTACATGGCACTATTAAACGGCACGAGTTTCACTTTAATTGCAGAGTGGAGTCAGAGTGAGACCTTCCAGGGAACCAGACTGCACTATGCCCAGCAGTGGACACTGATTCAAAACTACAGTAAAGAGACCGACATAGACATCCAACCACCAAGCCCCTGCAGCCTTTTACACGGCGAATTGCTGAGTTCCTATTCCCTGTCTGGAGATCTGAAGGCGGTTGTCAGGGAAACCAGCGGTCAGTTTGCTGGACAACAGTTCCTAGAGGTGTGGAGCAACAGCAGCTTAAAAAAGATCATCCATCTCACAGCTCTCAACAAACATGGGAGAGTGTATGAGGATGCTCAGTTTGGCTGCCTGGCCTGGTCTACATGTGAGAGCAGGCTGCTGTATGTAGCTGAGGGGAAAAGGTCTATAGGAGAGTCATACACTTCAGCCTCCAGCCCATCAGCTGGAGAGTCAACAGCAAGACCCTTGGGAAGCCCTTCTGAGAAGGACAGGAGTATGTACTGGGAGGACTGGGGGGAAGGCTTGACCAGTAAAAGTGTCCCAGTGCTGTGTGTGGCCGACGTGGCCAAGGGCACGGTAACAGTGCTGCAGGGTGTCCCTTCACATGTTTCCCCAGGCCAGGCTCTCTGGGCCCATgatggtgagtgtgtgttttttgtgGGCTGGTGGCATGAGCCCTTCAGACTGGGCCTGAGGTTCTGCTCCAATAGGAGGTCAGCTCTGTTTTGTCTGGACCTGGAAGGAAACTGTGAGTGTCTGTCTGGGGACACCAGCTCCGTCTCGTCCCCCCGTCTGAGCCCTGATGGACGCTACCTGGTGTACCTGGAGGGACAGGTGTTTGGCCCCCACAGCCAGTGTCTCACCATGCAGCAGTATGACCTGGAGATGAGGAGTATCTCGTTGCTGGTGGACGTAGTCAATAGGCCAAAGAAAGATGAGTTTGCTGGGCTGTATGAGGCTCTGCCACCTCGTTGCTGGGCGTCAGACAGCCAGAGAGTGGTCTTCAGTAGCGCCCGGAGGAACTGGAGGgacCTCTTTGTAGTGGACAGGACCACTAGGAGAGTAACCCGCATCTCTGACCctGAGAAATTTGGGAGCTGGAAGCTGCTCACCATCCAGAATAACCTGATGGTGGTCCACTGTTCCCATCTGAACGAGGCCCCACGCCTGGCAGTGGCTTTTCTTCCGTTGGccgggggggagggggaggtgtcCTGGGACCCTCTAGGTGAGTCGTGTCTACGTGGCGCCATCGTCAATGTTCTGGACATCATCCCTACGCCCCAGGAGGAGAACCCAGAGTACTCTGGCCTAGACTTCGGTGCCCTGCTGGTTACGTCAAACCACCTTCCGTCACGCACCAAGGTCCCTCTGGTGGTGTTTATCCATGGCGGGCCGCACTCCCAGTTCTTTGCAGAGTGGAATGTCACTACAGCAGTCCTGGTCAAACTGGGCTTTGCTGTACTCATGGtgaATTACCGGGGTTCCACTGGCTTTGGCCAGGACAGCATCCTCTCTCTGGCCGGTAACATTGGGAGCCAGGACGTCAAGGATGTGCAGAGGGCTGTACTAACTGCCCTTGCTGACCAAACTGCTGAGAAGCTCTTAACCCTTGACCCTGATAAAGTGGTGGTGATGGGTGGGTCCCACGGGGGCTTCCTGGCCTGCCACCTGATTGGCCAGTACCCAGACTTCTACAAGGCGTGTGCCGTCAGGAACCCAGTCATCAACGCTGCCACCTTACTGGGAACCAGTGACATCGTGGACTGGCGTTACTCTTGTGTGGGGCTGCAGTACTCTTATGACCAGCTGCCCACCCCAGAAGCTCTCACCACCATGCTCCAGAAATCCCCCATATCCTACGCACCTCAGATCAAGTCCCCAGTGCTCCTGATGCTGGGGGGTAAAGACAGGAGAGTGTCCCCTCACCAAGGTTTGGAGCTGTACCGCTCTCTGAAGAGTAGGGGCTCCCCCGTCAGGTTGCTTTGGTTTGCGGAGGACGCCCACTCTCTGGCTCGTGTGGACACTCAGGCTGACTGCTTTCTCAACGTGGTGCTTTGGTTCCAGCAGCACCTCCACCTGCACTGAGCCTCTACTGGTATGACTGGGGACACACACAAAGAACTGTGGAATTAAGACAGCCACACGTGTGTGTACTGCACTCCCTTTGTACATTTCAGTTGTTACCAGGTTCTTCTGGTGTTGGTTTTCTATGGTTGCATCATGTTACGCCAGcaataaatgttttgttgaaAAATGA

Function

GO: NA

KEGG:

id description
K01303 APEH; acylaminoacyl-peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915146 lncRNA downstream 10699 40720215 ~ 40720422 (-) True G804225
TU915077 lncRNA downstream 137455 40592586 ~ 40593666 (-) False LOC110531175
TU915078 lncRNA downstream 137667 40592586 ~ 40593454 (-) True LOC110531175
TU915066 lncRNA downstream 146485 40584422 ~ 40584636 (-) True G804154
TU915050 lncRNA downstream 156865 40550501 ~ 40574256 (-) True G804138
TU915158 lncRNA upstream 1499 40745192 ~ 40745458 (-) True G804237
TU915164 lncRNA upstream 15651 40759344 ~ 40759576 (-) True G804241
TU915162 lncRNA upstream 15954 40759647 ~ 40760196 (-) True G804239
TU915163 lncRNA upstream 20924 40764617 ~ 40765378 (-) True G804240
TU915169 lncRNA upstream 22652 40766345 ~ 40766615 (-) False G804245
XM_036987988.1 mRNA downstream 71682 40593513 ~ 40659439 (-) False LOC110531175
XM_021615680.2 mRNA downstream 281103 40446805 ~ 40450018 (-) False selenok
XM_021615679.2 mRNA downstream 281104 40442893 ~ 40450017 (-) False selenok
XM_036987984.1 mRNA downstream 281318 40442893 ~ 40449803 (-) False selenok
XM_036987985.1 mRNA downstream 281413 40442893 ~ 40449708 (-) False selenok
XM_021615685.2 mRNA upstream 1930 40745623 ~ 40759011 (-) False LOC110532074
XM_021615684.2 mRNA upstream 1930 40745623 ~ 40759016 (-) True LOC110532074
XM_036986943.1 mRNA upstream 16859 40760552 ~ 40762438 (-) True LOC118965936
XM_021615686.2 mRNA upstream 30472 40774165 ~ 40817545 (-) False prkar2aa
XM_021615687.2 mRNA upstream 30472 40774165 ~ 40817548 (-) True prkar2aa
TU915049 other downstream 157171 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 281181 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 281181 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 763147 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 768140 39961467 ~ 39962981 (-) False LOC110531168
TU915238 other upstream 118896 40862589 ~ 40912358 (-) True G804307
TU915185 other upstream 161679 40905372 ~ 40906872 (-) False wdr6
TU915184 other upstream 164902 40908595 ~ 40915974 (-) True wdr6
TU915182 other upstream 240789 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 693337 41437030 ~ 41437971 (-) False G804543

Expression Profile